Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0232 ATGGCTATGGAAGCTCTGAAATCACCCACCACCGCTGCCCCATCCTTCACTTTCCAGGAAGACAATATAAGCCACCATGACTCAGCGCCATGGGTTAAAAGAAAGCGTTCCAAACGTAGCCGCATGGACCACCTCCACCCTTCATGCACCGAGGATGAATACCTTGCTTTCTGCCTCATCATGCTCGCTCGTGGCGGCACCACCACCACCATCTCCGCCGACAAAACTCACACCACTCCTGCTCCATCAAACGAACGAGCACCGCTAGCCACAGCAACAGAACATTCCAAACTGAGTTACAAATGCTCTGTATGCAACAAAGCCTTCCCTTCTTACCAAGCACTCGGTGGACACAAGGCCAGTCACCGTAAACTCTCTGGCGGAAGCGGCGGTGAAGATCAGCCAACCTCTTCCGCCGTCACCAACAGTTCCGCCAACACCGTCTCCAGCAAAGGTAGCAACAAGACTCACGAGTGTTCCATCTGCCACAAGTCCTTCCCCACAGGACAAGCTTTAGGAGGACACAAGCGTTGCCACTATGACGGTGGTGCAGGCGGTGGTAGCAGCAGCGCAATCACCGCTTCTGAAGGAATAGGGTCCACCCACACCGTGAGTCATAGCTACAAGCGTGACTTTGATCTCAACCTACCTGCTTTTCCAGACTTTGCAACTAAGTTCTTAGTGGAAGATGAAGTTTCAAGTCCTCTACCCATGAAGAAGCCTCATCTTTTTTGCCATTCCCAGCTTTGA 750 0.5227 MAMEALKSPTTAAPSFTFQEDNISHHDSAPWVKRKRSKRSRMDHLHPSCTEDEYLAFCLIMLARGGTTTTISADKTHTTPAPSNERAPLATATEHSKLSYKCSVCNKAFPSYQALGGHKASHRKLSGGSGGEDQPTSSAVTNSSANTVSSKGSNKTHECSICHKSFPTGQALGGHKRCHYDGGAGGGSSSAITASEGIGSTHTVSHSYKRDFDLNLPAFPDFATKFLVEDEVSSPLPMKKPHLFCHSQL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0232 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 179 IPR013087 -
Lal21g0232 249 PANTHER ZINC FINGER PROTEIN ZAT10 1 244 - -
Lal21g0232 249 MobiDBLite consensus disorder prediction 130 157 - -
Lal21g0232 249 Gene3D Classic Zinc Finger 97 179 - -
Lal21g0232 249 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 244 IPR044653 GO:0003700
Lal21g0232 249 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Lal21g0232 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Lal21g0232 249 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Lal21g0232 249 SUPERFAMILY beta-beta-alpha zinc fingers 100 179 IPR036236 -
Lal21g0232 249 SMART c2h2final6 100 122 IPR013087 -
Lal21g0232 249 SMART c2h2final6 157 179 IPR013087 -
Lal21g0232 249 MobiDBLite consensus disorder prediction 119 157 - -
Lal21g0232 249 Pfam C2H2-type zinc finger 100 124 - -
Lal21g0232 249 Pfam C2H2-type zinc finger 157 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0232 Lal-Chr21 1532552 1533301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0232 1 243 C2H2 Transcription Factor Family AT1G27730 49.194 3.04e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal21g0232 zf-C2H2_6 9.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0232 - - aip:107606374 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0232 21 1532552 1533301 Lal13g0374 13 2356665 2357450 ECH
Lal21g0232 21 1532552 1533301 Lal12g0385 12 2734151 2734906 ECH
Lal21g0232 21 1532552 1533301 Lal21g0232 21 1532552 1533301 ECH
Lal8g0670 8 4729651 4730364 Lal21g0232 21 1532552 1533301 PCT
Lal21g0232 21 1532552 1533301 Lal8g0670 8 4729651 4730364 PCT