LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal17g0144	ATGGAAAACTTACACTCAGAGGCTGAGGAGATCATGAAGGGAACAAGCACTGAAGATGACAACATCATAATAAACCCGGCGTTTGAGGATGGCCTGAATAATTGGTCAGGAAGAGGGTGCAAAATTGTCTTACATGATTCCATGGGAGATGGCAAAATCTTTCCAAAGTCTGGCAAGTTCTTTGCATCTGCGACAGAACGGACGCAAAGCTGGAATGGAATTCAGCAAGAGATCACGACACGAGTGCAGCGCAAACTGGCCTATGAGGTCACTGCTTTGGTTCGGATATTTGGGAACAATGTCACCACTTCTGATGTAAGAGCTACTTTGTATGTTCAAACACCAGATTTTCGAGAGCAGTACATAGGCATTGCCAATGTGCAGGTAACAGATAAAGATTGGGCTGAAATGCAGGGGAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTGGTTGTTTATTTGGAAGGTCCTCCTTCAGGCACTGACATTCTTCTCAATACTTTGGTTATAAAGCATGCTCCTAAAACACCTCCTTCTACACCCCCGGATTTTGAGGATGGTGCTTTTGGGATTAATATAATAGAGAACAGTGATCTGGCTAAGGGTACCAATGGATGGTTTCCACTTGGTAATTGTACATTAAGTGTAGGAACTGGTTCCCCACGCATAATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTAAGTGGGCATTACATACTTGTGACTAACCGTACACAAACATGGATGGGTCCAGCTCAGATGATCACAGAGAAATTGAAATTGTTTCTAACTTACCAAGTATCTGCATGGGTCAGGATTGGTTCAGGATCCAGTGGGCCTCAGAATGTGAATATTGCCCTCAGTGTTGACAACCAGTGGGTCAATGGAGGACAAGTTGAAGTGGCTGATGGGAAATGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAGGTGCCATCAAAGGTTATGGTTTATATCCAAGGTCCTGCTTCTGGTATTGACTTAATGATTGCTGGACTTCAAATTTTCCCTGTTGATAGACAAGCAAGGTTTAGATATTTAAGGAGACAGACAGACAAGATCCGCAAGCGTGACATAATCTTGAAATTCTCTGGGCTAGACTCAAACGAGTGTCTTAGAGCTATGGTGAAAGTTACACAAATCCAAAACGATTTTCCAATTGGATCATGCATCAATAGATCAAATATTGAGAATGAAGATTTCGTTGACTTTTTTTTGAATCATTTTAATTGGGCTGTGTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGTCACAAAAGGGGAATTTCAATTACAAAGATGCAGATGATATGTTAGACTTTTGCCAGAAGAACAACATAAATACACGTGGTCATTGTATATTCTGGGAAGTAGATGGCACTGTTCAACAATGGATCAAATCACTTAATAAAAGTGATTTAATGACAGTTGTCCAAAATAGACTAACTGGCTTGCTTACTCGATACAAGGGCAAGTTCAAGCACTATGATGTTAATAATGAAATGTTGCATGGTTCATTTTATCAAGATAGACTAGGTAAGGATATAAGGGCTAATATGTTCAAGACATCACATCAATTAGATTCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACTAGATCATCTCCTGAAAAATATATTCAACAAATTATTGATTTGCAAGGTCAAGGTGCTCCAGTGGGTGGAATTGGAATTCAAGGTCATATAGATAGCCCTGTGGGGCCTATAGTATGTTCTGCTCTTGATAAATTAGGCACTCTTGGTTTACCAATATGGTTTACTGAACTTGATGTGTCTTCTACTAATGAATATGTTAGAGCGGATGATCTTGAAGTTATGCTGAGGGAAGCTATGGCACACCCTTCAATAGAGGGTATAATGCTATGGGGATTTTGGGAATTGTTTATGAGCAGGGACAATTCACACTTGGTCAATGCAGAAGGTGGTATCAATGAAGCTGGGAAAAGATTCCTTGCTCTTAAAAAAGAGTGGCTATCTCACTCACATGGTCTTGTTGATGAGCAAGGGTACTTCACCTTCAGAGGTTTTAATGGAAAGTACAAGGTGGAAGTTGTGACCTTAGCTAAGGAAATTTCTAAGACATTTGTTGTTGTTGACAATGGTGACTCTCCACTGGTGGTATCAATCGATTTATAA	2211	0.4034	MENLHSEAEEIMKGTSTEDDNIIINPAFEDGLNNWSGRGCKIVLHDSMGDGKIFPKSGKFFASATERTQSWNGIQQEITTRVQRKLAYEVTALVRIFGNNVTTSDVRATLYVQTPDFREQYIGIANVQVTDKDWAEMQGKFLLNGSPSKVVVYLEGPPSGTDILLNTLVIKHAPKTPPSTPPDFEDGAFGINIIENSDLAKGTNGWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGHYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSGSSGPQNVNIALSVDNQWVNGGQVEVADGKWHEIGGSFRIEKVPSKVMVYIQGPASGIDLMIAGLQIFPVDRQARFRYLRRQTDKIRKRDIILKFSGLDSNECLRAMVKVTQIQNDFPIGSCINRSNIENEDFVDFFLNHFNWAVFGNELKWYWTESQKGNFNYKDADDMLDFCQKNNINTRGHCIFWEVDGTVQQWIKSLNKSDLMTVVQNRLTGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTSHQLDSSATLFVNDYHVEDGCDTRSSPEKYIQQIIDLQGQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDVSSTNEYVRADDLEVMLREAMAHPSIEGIMLWGFWELFMSRDNSHLVNAEGGINEAGKRFLALKKEWLSHSHGLVDEQGYFTFRGFNGKYKVEVVTLAKEISKTFVVVDNGDSPLVVSIDL	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal17g0144	736	SMART	glyco_10	429	679	IPR001000	GO:0004553\|GO:0005975
	Lal17g0144	736	SUPERFAMILY	Galactose-binding domain-like	190	350	IPR008979	-
	Lal17g0144	736	SUPERFAMILY	Galactose-binding domain-like	19	175	IPR008979	-
	Lal17g0144	736	PRINTS	Glycosyl hydrolase family 10 signature	460	472	IPR001000	GO:0004553\|GO:0005975
	Lal17g0144	736	PRINTS	Glycosyl hydrolase family 10 signature	542	553	IPR001000	GO:0004553\|GO:0005975
	Lal17g0144	736	PRINTS	Glycosyl hydrolase family 10 signature	574	586	IPR001000	GO:0004553\|GO:0005975
	Lal17g0144	736	Gene3D	Glycosidases	385	676	-	-
	Lal17g0144	736	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	383	678	IPR001000	GO:0004553\|GO:0005975
	Lal17g0144	736	PANTHER	ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN	10	736	-	-
	Lal17g0144	736	Pfam	Glycosyl hydrolase family 10	391	649	IPR001000	GO:0004553\|GO:0005975
	Lal17g0144	736	PANTHER	GLYCOSYL HYDROLASE	10	736	IPR044846	GO:0004553\|GO:0005975
	Lal17g0144	736	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	606	616	IPR031158	-
	Lal17g0144	736	Gene3D	-	14	172	-	-
	Lal17g0144	736	Gene3D	-	188	347	-	-
	Lal17g0144	736	SUPERFAMILY	(Trans)glycosidases	387	686	IPR017853	-
	Lal17g0144	736	Pfam	Carbohydrate binding domain	20	158	IPR003305	GO:0016798
	Lal17g0144	736	Pfam	Carbohydrate binding domain	192	335	IPR003305	GO:0016798

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal17g0144	Lal-Chr17	888444	898037	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal17g0144	4	736	Glycoside Hydrolase	AT1G58370	72.517	0.0	1141

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal17g0144	-		-	gmx:100784250	1307.35

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0144	17	888444	898037	Lal17g0144	17	888444	898037	ECH
	Lal10g0751	10	15173464	15179511	Lal17g0144	17	888444	898037	PCT
	Lal17g0144	17	888444	898037	Lal10g0751	10	15173464	15179511	PCT