Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0111 ATGGCTATGGAAGCTCTCAAATCACCCACCACCACCACCACCACCTCACCCCTCATGTTTAACGAAGACAATCTTGACTACCTAGATTCAGCACCACGGGCTAAAAGAAAGCGTTCCAAGCGTAACCGCATGGACCACCACCACCACCCTTCATGTACTGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCTCTTCCGACAAGACTTACACTGTTCCTGCTCCATCACCACCGCTACCTATACAAGAGTTCAAGTTCAGTTACAAATGTTCTGTATGCAACAAAGCCTTCCCTTCATACCAAGCACTCGGTGGACACAAAGCTAGTCACCGTAAACTCGCTGGAGCTAGCGGCGGTGAAGATCAGCCAACCTCCTCCGCCGTCACCACCACTTCAGCCAACACCTCATCCAGTAAAGGAGGAAACAAGACACACGGGTGTTCAATCTGTCACAAGTCCTTCCCCACTGGACAAGCTTTAGGAGGACACAAGCGTTGCCACTATGACGGTGGTGCTGGTAGCAGCAGCGCTATCACCGCCTCTGAAGGTGTGGGGTCCACTCACACCGTGAGTCATAGCCACCAGCGTGACTTTGATCTTAATCTCCCAGCTTTTCCAACAAAGTTCTTTGTGGAGGATGAAGTTTCAAGCCCTCACCCTTTGAAGAAGCCTCGTCTTTTAACCATTCCCACCATTGAAATTTCTCAATTCTAA 717 0.5007 MAMEALKSPTTTTTTSPLMFNEDNLDYLDSAPRAKRKRSKRNRMDHHHHPSCTEEEYLALCLIMLSSDKTYTVPAPSPPLPIQEFKFSYKCSVCNKAFPSYQALGGHKASHRKLAGASGGEDQPTSSAVTTTSANTSSSKGGNKTHGCSICHKSFPTGQALGGHKRCHYDGGAGSSSAITASEGVGSTHTVSHSHQRDFDLNLPAFPTKFFVEDEVSSPHPLKKPRLLTIPTIEISQF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0111 238 MobiDBLite consensus disorder prediction 112 145 - -
Lal17g0111 238 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Lal17g0111 238 SMART c2h2final6 89 111 IPR013087 -
Lal17g0111 238 SMART c2h2final6 146 168 IPR013087 -
Lal17g0111 238 SUPERFAMILY beta-beta-alpha zinc fingers 89 168 IPR036236 -
Lal17g0111 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 230 IPR044653 GO:0003700
Lal17g0111 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Lal17g0111 238 MobiDBLite consensus disorder prediction 29 49 - -
Lal17g0111 238 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lal17g0111 238 Gene3D Classic Zinc Finger 86 168 - -
Lal17g0111 238 Pfam C2H2-type zinc finger 146 170 - -
Lal17g0111 238 Pfam C2H2-type zinc finger 89 113 - -
Lal17g0111 238 MobiDBLite consensus disorder prediction 120 145 - -
Lal17g0111 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 168 IPR013087 -
Lal17g0111 238 PANTHER ZINC FINGER PROTEIN ZAT10 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0111 Lal-Chr17 697616 698332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0111 1 227 C2H2 Transcription Factor Family AT1G27730 52.340 1.03e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal17g0111 zf-C2H2_6 8.3e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0111 17 697616 698332 Lal13g0374 13 2356665 2357450 ECH
Lal17g0111 17 697616 698332 Lal12g0385 12 2734151 2734906 ECH
Lal17g0111 17 697616 698332 Lal17g0111 17 697616 698332 ECH