Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0374 ATGGCTTTAGAGGCTCTTAATTCTCCCACACCCTTCTCTAGTAGCTACAAAGAAGAGGATAAAGAAATTGATGTTCATATGAGTGAAGCGTGGGCCAAGAGAAAACGTTCAAAACGACCTCGTCTTGATACTCCACCTACAGAAGAAGAGTACCTTGCTCTTTGTCTCATCATGTTAGCACAAAGTGGCAACAACAATGAAACAGAATCAACATCTTCGAAGTCTCAGCAACCACAACAACAAAAGGAAGAACATGAATCATTACCGGTTGTTAAGGTGATGAGTCATCGGTGCTCCGTTTGCAACAAAGCTTTTTCGTCTTATCAAGCACTTGGTGGACACAAAGCCAGTCACCGCAAGTCCTTATCTGAAAACGGTACCGCGGTTACCACCATCGCTGCCACCAACAACAGCACCTCCACCGCCATAGCCAATAAAAAGCTTCATGAATGTTCCATCTGTCACAAGTCTTTCCCTACGGGTCAGGCTCTCGGTGGCCACAAGCGGTGTCACTATGAAGGTGGCATCAACAACAACAACAGCAACATCAACACAAATAACAGCAGTGCTGTAACTGCTATTACATCATCAGAGGGTGGCGGCGCTTCCAGCCATCGACACCGTGACTTTGACCTAAACCTGCCGGCGCCGTTGACTGAATTCTTGGAGCCGGTGAGGTTCGACGGCGAGAAGAAGAAAGTGAAGATATTTGAACAAGAGGTGGAAAGTCCGTTGCCGGTAACGGCGAAGAGGCAGCGTTTGTTTTCTGGTGAAGACGATGAATGA 786 0.4707 MALEALNSPTPFSSSYKEEDKEIDVHMSEAWAKRKRSKRPRLDTPPTEEEYLALCLIMLAQSGNNNETESTSSKSQQPQQQKEEHESLPVVKVMSHRCSVCNKAFSSYQALGGHKASHRKSLSENGTAVTTIAATNNSTSTAIANKKLHECSICHKSFPTGQALGGHKRCHYEGGINNNNSNINTNNSSAVTAITSSEGGGASSHRHRDFDLNLPAPLTEFLEPVRFDGEKKKVKIFEQEVESPLPVTAKRQRLFSGEDDE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0374 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Lal13g0374 261 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Lal13g0374 261 Gene3D Classic Zinc Finger 93 171 - -
Lal13g0374 261 MobiDBLite consensus disorder prediction 1 20 - -
Lal13g0374 261 PANTHER ZINC FINGER PROTEIN ZAT10 1 253 - -
Lal13g0374 261 SUPERFAMILY beta-beta-alpha zinc fingers 96 171 IPR036236 -
Lal13g0374 261 MobiDBLite consensus disorder prediction 64 78 - -
Lal13g0374 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 253 IPR044653 GO:0003700
Lal13g0374 261 MobiDBLite consensus disorder prediction 64 87 - -
Lal13g0374 261 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Lal13g0374 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Lal13g0374 261 Pfam C2H2-type zinc finger 149 172 - -
Lal13g0374 261 Pfam C2H2-type zinc finger 96 120 - -
Lal13g0374 261 SMART c2h2final6 96 118 IPR013087 -
Lal13g0374 261 SMART c2h2final6 149 171 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0374 Lal-Chr13 2356665 2357450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0374 1 254 C2H2 Transcription Factor Family AT1G27730 43.233 3.32e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g0374 zf-C2H2_6 2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0374 13 2356665 2357450 Lal13g0374 13 2356665 2357450 ECH
Lal17g0111 17 697616 698332 Lal13g0374 13 2356665 2357450 ECH
Lal21g0232 21 1532552 1533301 Lal13g0374 13 2356665 2357450 ECH
Lal8g0670 8 4729651 4730364 Lal13g0374 13 2356665 2357450 ECH
Lal12g0385 12 2734151 2734906 Lal13g0374 13 2356665 2357450 LSH