Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0385 ATGGCCTTAGAGGCTCTAAATTCACCCACACCCTTCAGTGGTAGCAGCTACGAAGAAGAGGAAGAAGATAAGGTTGATCTTCACGTGTGGGCTAAGAGGAAGCGCTCAAAACGACCTCGTCTTGAAAATCCAACCACTGAAGAAGAATACCTAGCTCTCTGCCTCATCATGCTCGCACAAAACGGCAACACCAACAACCAAAACGACAACAAAACCTTTCTTATTCAACAACAACAACATAAACCATCACCGTCTATGAAGGTTATCAGTCACCGGTGCTCCGTTTGCAACAAAGCTTTCCCATCTTATCAAGCACTCGGTGGACACACGGCCAGCCACCGCAAATCCTTATCTGAAAACGCCACCACCGCCGTTACCACAGTCTCTGCCACAACAACCACCACCAACGAGACAGCCGCTAAAAAGCTTCACGAATGTTCCATCTGTCACAAGTCTTTCCCTACGGGTCAGGCCTTGGGTGGTCATAAGCGATGCCACTATGATGGTGGCAACAGCAATAGCAACATCAACACAAACAATAGCAGTGCCGTGACGTTCTTTGAGAGCGGTGCATCCTCCCATAGCCACCGTGGGTTTGAGTTTGACCTAAACCTGCCGGCACCGTTGACGGAGTTATGGGAGTTGGCGAGGGTCGACGGCGGGAAGAAGGTGAAGATTAACGAACAAGAGGTGGAGAGCCCTTTGCCGGTAACCACCAAGAGGCCGCGTTTGTTTCCGGGTGAAGATGATAAATGA 756 0.5 MALEALNSPTPFSGSSYEEEEEDKVDLHVWAKRKRSKRPRLENPTTEEEYLALCLIMLAQNGNTNNQNDNKTFLIQQQQHKPSPSMKVISHRCSVCNKAFPSYQALGGHTASHRKSLSENATTAVTTVSATTTTTNETAAKKLHECSICHKSFPTGQALGGHKRCHYDGGNSNSNINTNNSSAVTFFESGASSHSHRGFEFDLNLPAPLTELWELARVDGGKKVKINEQEVESPLPVTTKRPRLFPGEDDK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0385 251 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Lal12g0385 251 Pfam C2H2-type zinc finger 91 115 - -
Lal12g0385 251 Pfam C2H2-type zinc finger 144 168 - -
Lal12g0385 251 Gene3D Classic Zinc Finger 88 166 - -
Lal12g0385 251 PANTHER ZINC FINGER PROTEIN ZAT10 1 246 - -
Lal12g0385 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Lal12g0385 251 MobiDBLite consensus disorder prediction 229 251 - -
Lal12g0385 251 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lal12g0385 251 SUPERFAMILY beta-beta-alpha zinc fingers 91 166 IPR036236 -
Lal12g0385 251 MobiDBLite consensus disorder prediction 1 27 - -
Lal12g0385 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Lal12g0385 251 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 246 IPR044653 GO:0003700
Lal12g0385 251 SMART c2h2final6 91 113 IPR013087 -
Lal12g0385 251 SMART c2h2final6 144 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0385 Lal-Chr12 2734151 2734906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0385 1 246 C2H2 Transcription Factor Family AT1G27730 45.946 3.96e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0385 zf-C2H2_6 1e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0385 12 2734151 2734906 Lal12g0385 12 2734151 2734906 ECH
Lal17g0111 17 697616 698332 Lal12g0385 12 2734151 2734906 ECH
Lal21g0232 21 1532552 1533301 Lal12g0385 12 2734151 2734906 ECH
Lal8g0670 8 4729651 4730364 Lal12g0385 12 2734151 2734906 ECH
Lal12g0385 12 2734151 2734906 Lal13g0374 13 2356665 2357450 LSH