Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1553 ATGACGCAACCACCATTTCCGCCATCCAAAATATGCTGCGCCGGTTGCCAATCGCTCCTGGATGCGCCGCCGCCGGACGTCGTAGACTTCACTTGTCCTCTCTGTCTAATGCCGCAGAGGATACCTCCGTTAGGATCAAAGGCTAAGGCTCGTAAATCGCACGGCGTCGTTTCCGGCGCTAAGACGAAAGTTCCGTGTACTAACTGCTCCACCGTTTGCAATGTGCCTATTGGCCTTGCGAAATTTGCTTGCCCTAAGTGCGCGCTTGAGATCACAGTCAATGTCGTCGAAGAAGTCAACGAGCTAGCGGTTGAAGTGGAGCGGGATGAGGATGAAGGTGGTGTGGCTGGAGAAACATTTACAGATTATCGACCAGCAAAAGTATCTTTTGGACCTCCACATCCAGATTCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCTACTTATGATCCAATAACTAAAGTTGACTTGGAAATTTCAAAGGCTTTGTCGTGCTTGCAAATAGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACACTTCCCTGACGGTTCTAGGGCAGGTTTCTTTATAGGAGATGGTGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCACCATGGTAGGAGAAAAGCTTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTAGATGATATTGGTGCAACTTGTGTTAAAGTGCATGCTTTGAATAAACTGCCTTATTCTAAGCTTGACTCAAAGTCTGTTGGGGTCAAGGAGGGAGTTATTTTCTTGACATACAGTAGCCTTATAGCGTCTTCTGAGAAAGGTCCTTCTCGTCTCCAACAACTCGTGCGGTGGTGTGGGCCACAGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAAGCCAAGAATCTGGTACCTGAATGTGGTAAACAGCCAACACGAACTGGTGAAGCAGTGCTTGATATCCAGGCTCAACTACCTGAAGCTCGTGTTGTATATTGCTCAGCCACTGGTGCATCTGAATCTCGTAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGCTGGTACTTCATTCAATGATTTCAGTGAATTTCTAGGTGCTCTTGAAAGAGGTGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACGCTAAGTTACAGTGGTGCTGAGTTTGAAGTTATTGAAGCCCCATTAGAAGATGAAATGATGGACATGTATGAAAAGGCTGCCGAGTTTTGGGTGGAATTGTATGCAAAATTGCTTTTAGCCATTAACATCCCACTTGTGAAACTTAAATGTCGTCAAGTATGGGCGTTATACTGGGCAAGCCACCAGCGTTTTTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTGCTGTGAGATTAGTGAAGCAAGCATTAATGGAAGATAAGTGTGCAGTAATTGGTCTGCAAAGCACTGGGGAAGCAAGAACAGAAGAAGCTGTGGCAAAATATGGCTCTGAACTTGATGACTTTCTTTCTGGACCTCGAGAATTGCTGCTAAAGTTCGTGGAAGAATATTACCCGTTGCCAGAAAAGCCTGAGCTTCTCCCCGTGGAAGATGGTGTAATAGAGCTTCAGAGGAAGAGGCACTCAACAAGTCCTGTTGCTTCAGCAAGAGGAAGGGTCCGAAAAGTAGCTAAGTTGGAGCCTCTTAGTGATTTTGAAAGTGAAGAATCTGAAACTGCCTCTGATCTTGAATCGGCTGAATCTGATTATGAACCAGAAGGGGAAGCTGCCTCTGCTATTGAATCTTCTGACTCTGATTACGATGAGCTTCAGATGTGTCAAATTTGCAGTACTGAGGAGGAAATGGAAAATTTGATGCAGTGTTCTTCCTGTGGTAAACCTGTCCATCAAGCATGCTTGATGCCTCCAGTTGGCCATTTGGTTCCCGAAGTATGGTCATGCCATATGTGCATGGAAAAAGAAAAACCAGATGATCTAAAAGCAAGACAAGCCTATCTAACTGAGATGCAGAAGAGGTATGATACAGCCTTGGAGTGTAAGACAAAAATATTAGAAGCCATTCATTCCTTGAATCTTCCAAATAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCCTGACAAAGTTGCAGAAATAACTGGAAGGAAAGGCATGCTTGTGAGGGACCCAAGTGGAAAGGGTGTAAATTATCAGGCTCGTAACACCAAGGATGTCACTAAGGAGATGGTCAACATGCATGAAAAACAGCTCTTTATGGATGCTAAAAAGTTAGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTACAGGCAGATAGAAGAGCGACAAATCAGAAAAGGCGGATCCATATAACTTTAGAGCTTCCATGGAGTGCTGACCGTGCAATTCAGCAGTTTGGAAGAACTCATCGCTCAAATCAAGCTTCAGCGCCACAATACAGGTTACTCATTACAGACCTTGGTGGAGAGCGAAGGTTTGCATCAGTTATTGCTAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGATCGTAGGGCAGGACCTTCATTAAGTGCTTATAATTATGATACTACTTATGGAAAGAGGGCTTTGATGATTATGTACAGAGGAATAATGGAGCAGGATTCTCTTCCTGTTGTACCTCCGGGATGTTTACCTGACAAGCCAGATATGATTCATGATTTTATTACGCAAGCAAAATCTGCTCTTGTATGTGTTGGAATAATTAGGGACCCAATTCAAGATTCTGGAAGGATATGTGACCGCATTACCGATTCAGACATGCAAGATGTTGGGCGATTCCTCAACCGGATTTTGGGGCTAGCTCCTGGGATTCAGAATAAGCTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTCATTCAAAATGCTCGCATTGAAGGTAACTTGGACACGGGCATTGTTGACATGAATGCTAATGTCATTGAACTAAAAGGATCTCCAAAGATTGTCTATGTTGATCAAGTGACTGGGGCTTCAACTGTTCTGTTCACATTCATTTTCGATCGTGGGACTACATGGGAGCTGGCAAATACCATTCTGAATGAGAAGCAGAAAGATGTCAATGATGGTTTCTATGAGTCAAGGAGGGAGTGGATGGGAAGACGCCATTTCATTTTAGCACTTGAAAGTTCTGCTTCAGGTTTCTATAAGATAATTCGCCCCACAGTTGGAGAATCACTTCGGGAGATGCATCTGACAGAATTAAAAAGTAAATATAGAAAACTTTCATCTTCAAAAAATGCTCAAATTGGTTGGGAAGACGAATATGAAGTTTCTTGTAAACAGTGCATGCATGGTCCGAAATGTAAGCTTCGCAGTTTCTGTACAGTCGGCCGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATTCTTCCTCTTTGGGGAAACATAGAATCGGCCTTCTCTAAACAGGCCCGCTTAAGCCATAGGAGGCTACGTATTGTTCGCACAGAAACCACTTCGGATAACCAACATATAGTTGGGCTACTTGTTCCTAATGCAGCAGTTGATACCGTGCTTAAAGGTTTGGTTCCAGAAACGGATGATTGA 3660 0.4385 MTQPPFPPSKICCAGCQSLLDAPPPDVVDFTCPLCLMPQRIPPLGSKAKARKSHGVVSGAKTKVPCTNCSTVCNVPIGLAKFACPKCALEITVNVVEEVNELAVEVERDEDEGGVAGETFTDYRPAKVSFGPPHPDSVVETSSLSAVQPPEPTYDPITKVDLEISKALSCLQIETLVYACQRHLQHFPDGSRAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDIGATCVKVHALNKLPYSKLDSKSVGVKEGVIFLTYSSLIASSEKGPSRLQQLVRWCGPQFDGLIIFDECHKAKNLVPECGKQPTRTGEAVLDIQAQLPEARVVYCSATGASESRNMGYMVRLGLWGAGTSFNDFSEFLGALERGGVGALELVAMDMKARGMYLCRTLSYSGAEFEVIEAPLEDEMMDMYEKAAEFWVELYAKLLLAINIPLVKLKCRQVWALYWASHQRFFRHMCMSAKVPAAVRLVKQALMEDKCAVIGLQSTGEARTEEAVAKYGSELDDFLSGPRELLLKFVEEYYPLPEKPELLPVEDGVIELQRKRHSTSPVASARGRVRKVAKLEPLSDFESEESETASDLESAESDYEPEGEAASAIESSDSDYDELQMCQICSTEEEMENLMQCSSCGKPVHQACLMPPVGHLVPEVWSCHMCMEKEKPDDLKARQAYLTEMQKRYDTALECKTKILEAIHSLNLPNNPLDDIIDQLGGPDKVAEITGRKGMLVRDPSGKGVNYQARNTKDVTKEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRATNQKRRIHITLELPWSADRAIQQFGRTHRSNQASAPQYRLLITDLGGERRFASVIAKRLESLGALTQGDRRAGPSLSAYNYDTTYGKRALMIMYRGIMEQDSLPVVPPGCLPDKPDMIHDFITQAKSALVCVGIIRDPIQDSGRICDRITDSDMQDVGRFLNRILGLAPGIQNKLFELFVSILDLLIQNARIEGNLDTGIVDMNANVIELKGSPKIVYVDQVTGASTVLFTFIFDRGTTWELANTILNEKQKDVNDGFYESRREWMGRRHFILALESSASGFYKIIRPTVGESLREMHLTELKSKYRKLSSSKNAQIGWEDEYEVSCKQCMHGPKCKLRSFCTVGRRLQEVNVLGGLILPLWGNIESAFSKQARLSHRRLRIVRTETTSDNQHIVGLLVPNAAVDTVLKGLVPETDD 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1553 1219 MobiDBLite consensus disorder prediction 590 608 - -
Lal11g1553 1219 Pfam P-loop containing NTP hydrolase pore-1 133 433 IPR039187 -
Lal11g1553 1219 ProSiteProfiles Zinc finger PHD-type profile. 627 677 IPR019787 -
Lal11g1553 1219 SMART PHD_3 629 675 IPR001965 -
Lal11g1553 1219 Gene3D - 168 364 IPR027417 -
Lal11g1553 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 776 879 IPR027417 -
Lal11g1553 1219 PANTHER OS08G0223700 PROTEIN 10 97 - -
Lal11g1553 1219 PANTHER OS08G0223700 PROTEIN 97 1213 - -
Lal11g1553 1219 MobiDBLite consensus disorder prediction 584 622 - -
Lal11g1553 1219 Pfam PHD-finger 629 676 IPR019787 -
Lal11g1553 1219 ProSitePatterns Zinc finger PHD-type signature. 630 674 IPR019786 -
Lal11g1553 1219 Pfam C-terminal domain on Strawberry notch homologue 719 1004 IPR026937 -
Lal11g1553 1219 PANTHER STRAWBERRY NOTCH-RELATED 97 1213 IPR026741 GO:0006355
Lal11g1553 1219 PANTHER STRAWBERRY NOTCH-RELATED 10 97 IPR026741 GO:0006355
Lal11g1553 1219 SUPERFAMILY FYVE/PHD zinc finger 618 680 IPR011011 -
Lal11g1553 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 377 IPR027417 -
Lal11g1553 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 579 688 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1553 Lal-Chr11 18618861 18635905 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal11g1553 AAA_34 1.5e-130 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1553 - - gmx:100808670 1800.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1553 11 18618861 18635905 Lal11g1553 11 18618861 18635905 ECH