Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0772 ATGGCATTTGCAGGAACAACCCAAAAATGTATGGCTTGTGATAAAACAGTTTACTTGGTTGATAAGTTAACTGCAGATAACCGAGTGTTCCATAAAGCTTGCTTTAGATGCCATCACTGCAAAGGAACTCTTAAGCTAAGCAACTACAACTCTTTTGAGGGGGTTCTTTACTGCAGGCCACACTTTGATCAAATATTCAAAAGAACTGGTAGCCTTGACAAGAGCTTTGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCAGTGATAATGAGAAACCTGCAGCAGCCAAAGCCTCAAGTATGTTTGGTGGAACCAGAGACAAATGTGCTGGTTGTCAGAAAACTGTGTATCCCATTGAAAAGGTCACAGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATTAGTCCTTCCAATTACATTGCACATGAGGGAAAACTCTACTGCAAACACCATCATATACAACTTATCAAGGAGAAGGGTAATTTAAGCCAGCTTGAAGGTGATCAAGAGAAGAATGCAGTGCATGAGAAAATCAATAGTGAGGTTGCAGCAGAGACATGA 591 0.4061 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQIFKRTGSLDKSFEGTPKIAKPEKTSDNEKPAAAKASSMFGGTRDKCAGCQKTVYPIEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDQEKNAVHEKINSEVAAET 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0772 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lal10g0772 196 Pfam LIM domain 110 164 IPR001781 -
Lal10g0772 196 Pfam LIM domain 10 63 IPR001781 -
Lal10g0772 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lal10g0772 196 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Lal10g0772 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lal10g0772 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal10g0772 196 Gene3D Cysteine Rich Protein 105 174 - -
Lal10g0772 196 Gene3D Cysteine Rich Protein 4 74 - -
Lal10g0772 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lal10g0772 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal10g0772 196 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lal10g0772 196 SMART lim_4 9 61 IPR001781 -
Lal10g0772 196 SMART lim_4 109 161 IPR001781 -
Lal10g0772 196 MobiDBLite consensus disorder prediction 79 93 - -
Lal10g0772 196 MobiDBLite consensus disorder prediction 176 196 - -
Lal10g0772 196 MobiDBLite consensus disorder prediction 77 98 - -
Lal10g0772 196 CDD LIM2_SF3 110 170 - -
Lal10g0772 196 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Lal10g0772 196 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0772 Lal-Chr10 15452547 15455051 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal10g0772 LIM 3.7e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0772 10 15452547 15455051 Lal10g0772 10 15452547 15455051 ECH
Lal8g0681 8 4803381 4805266 Lal10g0772 10 15452547 15455051 LSH
Lal25g0611 25 4623959 4626676 Lal10g0772 10 15452547 15455051 LSH