Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0752 ATGGATGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTTCAAGTCCAAGGCCAAATTTCTTGTACTCTTCTTTGGCTAGTGGTTCAGGTGTTGGAAACCATCATCATCATCATCACGAGTTTCCCATAAACACCTTTCATAATCTTCAATCAGATGGTGGATCATATCATCCTCATCACTGTTTTCAATCAAATCAAGTACCACCACACTCTTCTGTGAAAACTGAAGCTGATAGCACTAACTCTCAGCTTCATTCTCCGATCTTCCACTATCCTTTAATGAGAGGAAATCTTCACAACAACATGATGCAGCAACACCAAGAAGGGAACCAAATTAGCTCTAATGAAGTTGAAGTTATAAAGGCCAAAATCATTGCTCATCCTCAATACTCCAATCTTTTAGAAGCTTACATGGATTGTCAAAAGGTTGGAGCTCCGGCGGATGTGGTGGCGCGTCTAGTTGCGGTTAGGCAAGAATTTGAGGCACGGCAGCGATCTTCAGTTAACTCAAGGGAAACTTCAAAGGACCCAGAACTTGACCAGTTTATGGAAGCTTATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTGTACAAGAAGCCATGGATTTCATGAGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCTGTGCGGATCTTCTCTGATAAGTATGAAGGTGTTGGGTCATCAGAAGAAGAACAAGAGAATAATAGTGGTGGAGAAACAGAACTTCCTGGTATTGATCCTCAATCGGAAGATCGTGAACTTAAAAACCACTTGCTGAAAAAATATAGTGGTTACTTAGGGAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAGAAGGGAAAGCTTCCTAAAGATGCTAGGCAGAAGCTACTAAATTGGTGGGAATTACACTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCAGAGTCAACTGGTTTAGACCAGAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGACATTGGAAACCCTCTGAAGATATGCAATTTATGGTGATGGATGGTCTGCACCCTCAGAATGCAGCAACTCTTTATATGGATGGTCCATATATGTCTGATGGTCACTATCGGCTAGGGCCATGA 1149 0.4091 MDEYTNNNHLSENTGSSPRPNFLYSSLASGSGVGNHHHHHHEFPINTFHNLQSDGGSYHPHHCFQSNQVPPHSSVKTEADSTNSQLHSPIFHYPLMRGNLHNNMMQQHQEGNQISSNEVEVIKAKIIAHPQYSNLLEAYMDCQKVGAPADVVARLVAVRQEFEARQRSSVNSRETSKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIETQLNMLCNGPVRIFSDKYEGVGSSEEEQENNSGGETELPGIDPQSEDRELKNHLLKKYSGYLGSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAATLYMDGPYMSDGHYRLGP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0752 382 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Lal10g0752 382 Pfam KNOX1 domain 122 163 IPR005540 GO:0003677|GO:0005634
Lal10g0752 382 CDD homeodomain 295 347 IPR001356 GO:0003677
Lal10g0752 382 SUPERFAMILY Homeodomain-like 284 358 IPR009057 -
Lal10g0752 382 ProSitePatterns 'Homeobox' domain signature. 321 344 IPR017970 GO:0000981|GO:0006355
Lal10g0752 382 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Lal10g0752 382 SMART ELK_2 263 284 IPR005539 GO:0003677
Lal10g0752 382 Pfam ELK domain 263 284 IPR005539 GO:0003677
Lal10g0752 382 MobiDBLite consensus disorder prediction 1 23 - -
Lal10g0752 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 374 - -
Lal10g0752 382 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 374 - -
Lal10g0752 382 MobiDBLite consensus disorder prediction 59 83 - -
Lal10g0752 382 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Lal10g0752 382 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Lal10g0752 382 MobiDBLite consensus disorder prediction 234 259 - -
Lal10g0752 382 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Lal10g0752 382 SMART HOX_1 285 350 IPR001356 GO:0003677
Lal10g0752 382 Pfam KNOX2 domain 175 221 IPR005541 GO:0003677|GO:0005634
Lal10g0752 382 Gene3D - 288 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0752 Lal-Chr10 15207209 15213190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0752 63 382 Homeobox Transcription Factor Family AT4G08150 69.909 7.38e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal10g0752 KNOX2 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0752 - - gmx:100807602 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0752 10 15207209 15213190 Lal10g0752 10 15207209 15213190 ECH
Lal8g0701 8 4975164 4979638 Lal10g0752 10 15207209 15213190 LSH