Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0406 ATGGAAAACTTGCAGAAGATCAATGCAGAAAACCACTCCGAGAAGACAACAAGCAAGGGATGTGTTTCCAGTGAAGATGAAAGCATCATAATAAACCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCTATGGGAGATGGGAAAATTCTTCCGAAGACTGGTAAAGTATTTGCATCTGCAACAGAACGTACACAAAGCTGGAACGGAATTCAGCAGGAGATCACTGGAAGAGTGCAGCGGAAGCTTGCCTACGAGGTTACGGCTGTAGTTCGGATATTCGGGAACAATGTCACAACTTCTGATGTTAGGGCTACTTTGTATGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGAATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTCTCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCGCTCCAGGCACTGACATTCTTGTCAATACTTTTGTTATAAAACATGCAGATAAAACACCACCTTCAACTCCCCCGGATTGTGAGGGTGCTGCGTTTGGTGTTAATATAATTGAAAACAGTAATCTGGCCAATGGCACCAATGGGTGGTTTCCACTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTATCATTCCACCAATGGCAAGAGACTCTCTTGGACCTCATGAATCTTTAAGTGGGCGTTACGTCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTTTAACTTATCAAGTATCTGCTTGGGTCCGAATTGGTAATGGATCAAGTGGGCCTCAAAATGTGAATGTTGCCCTTAGTGTTGACAACCAGTGGGTCAACGGAGGACAAGTTGAGGTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGACTTAATGCTTGCTGGACTTCAAATTTTTGCTGTTGATAGACATGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATCCGTAAGCGGGAGATCATCCTAAAATTCTCTGGTCTGGATTCAATTGGAAATCTTGGAACCCTGGTGAGAGTTAAACAAGTACAAAACGATTTCCCCATTGGATCGTGCATTAGTAGAAGCAACATTGACAACGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTCGGGAATGAGCTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCCGATGAAATGTTAGACTTATGTCAGAAGAACAAGATAGACACTCGGGGTCATTGCATCTTCTGGGATGTGGACAACACCGTTCAACAATGGATCAAATCACTGAATAAAACTGATTTGATGACAGCTGTCCAAAACCGCTTAAATGGCTTATTAACTCGCTACAAGGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGATAGACTAGGCAAAGATATAAGGGCAAACATGTTCAAGACCGCACACCAAATAGATCCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACAAGATCATCACCAGAAAAGTACATTCAACACATTCTTGATTTGAAAGAGCAAGGTGCCCCAGTTAGTGGAATAGGAATTCAAGGTCACATAGATAGCCCTGTGGGGCCCATTGTTTGTTCTGCCCTTGATAAAATGGGAACTCTTGGCATACCAATATGGTTCACTGAGCTTGATGTGTCTTCCACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTGCGGGAATCTTTGGCACACCCTGCTATAGATGGTGTTATGCTCTGGGGATTTTGGGAGTTGTTTATGAGTAGGGAAAATTCACACTTGGTGAATGCAGAAGGGGAACTCAACGAAGCTGGGAAAAGATACCTTGCTCTTAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTTGAAGTTGTGACCTTAGCAAAGAAAGTTACCAAGACATTCGTTGTTGACAAGGGTGACTCATCTCTCGTGGTATCAATCGATTTATAA 2229 0.4217 MENLQKINAENHSEKTTSKGCVSSEDESIIINPQFDDGLNNWSGRGCKIALHDSMGDGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNVTTSDVRATLYVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPAPGTDILVNTFVIKHADKTPPSTPPDCEGAAFGVNIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGRYVLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGNGSSGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMLAGLQIFAVDRHARFKYLRRQTDKIRKREIILKFSGLDSIGNLGTLVRVKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDNTVQQWIKSLNKTDLMTAVQNRLNGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQIDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLKEQGAPVSGIGIQGHIDSPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLRESLAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYNVEVVTLAKKVTKTFVVDKGDSSLVVSIDL* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0406 742 Gene3D Glycosidases 390 696 - -
Gso6g0406 742 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 390 685 IPR001000 GO:0004553|GO:0005975
Gso6g0406 742 SUPERFAMILY (Trans)glycosidases 393 693 IPR017853 -
Gso6g0406 742 SMART glyco_10 436 686 IPR001000 GO:0004553|GO:0005975
Gso6g0406 742 Pfam Carbohydrate binding domain 199 342 IPR003305 GO:0016798
Gso6g0406 742 Pfam Carbohydrate binding domain 28 166 IPR003305 GO:0016798
Gso6g0406 742 SUPERFAMILY Galactose-binding domain-like 26 182 IPR008979 -
Gso6g0406 742 Coils Coil 668 688 - -
Gso6g0406 742 PANTHER GLYCOSYL HYDROLASE 16 742 IPR044846 GO:0004553|GO:0005975
Gso6g0406 742 SUPERFAMILY Galactose-binding domain-like 197 357 IPR008979 -
Gso6g0406 742 Pfam Glycosyl hydrolase family 10 399 656 IPR001000 GO:0004553|GO:0005975
Gso6g0406 742 Gene3D - 194 355 - -
Gso6g0406 742 Gene3D - 22 180 - -
Gso6g0406 742 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 16 742 - -
Gso6g0406 742 MobiDBLite consensus disorder prediction 1 22 - -
Gso6g0406 742 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 613 623 IPR031158 -
Gso6g0406 742 PRINTS Glycosyl hydrolase family 10 signature 467 479 IPR001000 GO:0004553|GO:0005975
Gso6g0406 742 PRINTS Glycosyl hydrolase family 10 signature 549 560 IPR001000 GO:0004553|GO:0005975
Gso6g0406 742 PRINTS Glycosyl hydrolase family 10 signature 581 593 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0406 Gso-Chr6 3797944 3802068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0406 4 742 Glycoside Hydrolase AT1G58370 72.470 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0406 - - gmx:100784250 1518.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0427 4 4022936 4026795 Gso6g0406 6 3797944 3802068 GST
Gso17g1968 17 38865677 38871661 Gso6g0406 6 3797944 3802068 PCT
Gso6g0406 6 3797944 3802068 Gso17g1968 17 38865677 38871661 PCT