Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0404 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCAGAAGAAGATACCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGAAACTGGATCGCTTTGCCACAAAAGATTGGCCTTAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAGACACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCGGGAAGAACTGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAACACCGTAAGGAACTACAGGCACGCAACAAAGGAAACGGTGGTATCCTTAAACAGGAGAACAGTTCCTCGCTCTTGCTTCAGCAAAACAGTGCTCAACAATTACATCCATGTTGGCCACAGATTCCAGTGCTGCCACTTTCATCACCGTACACAAACCAAAGTCCAAGTTTCAACGACCAAGATTCCATTAGAAAGCTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATCCTAGATGGGTTGAATCTTCAGTTCCCACATGGTTCAAATTCTCTCTCATCAACACAACAAATTCAAGAGGAGCAAGTCCATGTTGGTTCTTCTGCACTAGGGTGCATGAACTCTATTGGCCACAATCAAGTACAATTTGGTCAGAGTAATGAGTACTGTGCTGAGTTGGTGCAAGGACAAGGGAGTTTCATTACCACAGCAATTGGGGAAATGGTTTCTTCTAATGATTATTCTCGAAGGTTATTAGGTGGGTCGTTGGAGTTCTTCTATGGGGAGGAAATGATTACTGATAATAAGATAATGGGTGCTTGTGCTTCTTCAAGTTGTGGGCAAAGTACTAATTGGGGTGAAACCAGTAGTTCTCTGATGTATCCTTCTCTTGTTGCTTCGAATTACGAGGGTGTGCGGCAAGAGATGCCACGAGAATGTGCTTTTCAAGAGTTGAGCTACCCGGGGGCGCAATAG 1068 0.456 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGGILKQENSSSLLLQQNSAQQLHPCWPQIPVLPLSSPYTNQSPSFNDQDSIRKLLIKLGGRFSDDYQPILDGLNLQFPHGSNSLSSTQQIQEEQVHVGSSALGCMNSIGHNQVQFGQSNEYCAELVQGQGSFITTAIGEMVSSNDYSRRLLGGSLEFFYGEEMITDNKIMGACASSSCGQSTNWGETSSSLMYPSLVASNYEGVRQEMPRECAFQELSYPGAQ* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0404 355 PANTHER OS09G0431300 PROTEIN 1 344 - -
Gso6g0404 355 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 344 - -
Gso6g0404 355 CDD SANT 71 113 IPR001005 -
Gso6g0404 355 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso6g0404 355 Gene3D - 7 68 - -
Gso6g0404 355 SMART sant 13 64 IPR001005 -
Gso6g0404 355 SMART sant 67 115 IPR001005 -
Gso6g0404 355 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso6g0404 355 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso6g0404 355 CDD SANT 16 62 IPR001005 -
Gso6g0404 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso6g0404 355 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso6g0404 355 Gene3D - 70 153 - -
Gso6g0404 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso6g0404 355 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0404 Gso-Chr6 3769552 3771514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0404 1 325 MYB Transcription Factor Family AT3G49690 47.941 8.60e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g0404 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0404 K09422 - gmx:778079 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0423 4 3963776 3965578 Gso6g0404 6 3769552 3771514 GST
Gso14g0806 14 8673300 8675424 Gso6g0404 6 3769552 3771514 PCT
Gso17g1971 17 38960604 38962762 Gso6g0404 6 3769552 3771514 PCT
Gso6g0404 6 3769552 3771514 Gso14g0806 14 8673300 8675424 PCT
Gso6g0404 6 3769552 3771514 Gso17g1971 17 38960604 38962762 PCT