Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0400 ATGGTGGACCCCTACGTGCTCGGATGGATCATATGCGCCGTGCTCAGCCTCGTCGCGCTTCGCAATTTCGCTTTCGCGCGGAAGAACCGTTGCCATTCGTCTGAGACCGATGCCACTCGCCGCGCGGAAAATGTCACCACCGCCGCCGGAGAATGCAGATCCTCGAGTCGCGACGGCGACGTTGACGTCATTATTGTCGGAGCTGGTGTCGCCGGCTCCGCTCTCGCTCACACTCTCGGCAAGGATGGGCGTCGGGTACTTGTCATTGAAAGAGATTTGAGTGAACAAGACCGAATTGTTGGGGAGTTGCTACAACCTGGAGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAACTAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAGCACACAAGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATGTTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTTCCAATGTACGACTGGAGCAAGGAACAGTCACTTCCCTACTTGAAGAGAAGGGGGTTATTAAAGGTGTGCACTACAAAACGAAGGATAGTCAAGAATTATCAGCTTGTGCACCCCTTACCGTTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGATCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTCATTTCGTTGGCTTAATTTTGGAGAGTTGTGAACTTCCTTATGCTAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTGTTCTATCGGATAAGTAGTTCAGAAATTCGTTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCGAATGGTGAAATGACAAATTATTTGAAGACAGTGGTAGCTCCACAGATTCCACCTGAGCTTCATGACTCATTCGTAGCTGCAGTGGACAAAGGCAACATCAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTATCCTACGCCCGGAGCCCTGTTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACCGGGGGTGGAATGACTGTGGCATTATCTGACATAGTAGTGCTGCGAAATCTTCTGAGACCTTTGCGTGACCTGAATGATGCACCTGGCCTTTGCAAATACCTAGAATCCTTTTATACCTTACGCAAGCCTGTGGCATCCACTATAAATACGTTGGCAGGAGCACTTTACAAGGTTTTTTGCGCATCACCTGATCCAGCAAGGAAGGAAATGCGCCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTCTATTCTCGGAAGGGCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGGCCCTTGAGCCTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTACTGCTACCATTTCCTTCACCTAAACGGATGTGGATTGGAGTCCGATTAATTTCTAGTGCATCTGGAATCATCTTGCCAATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACTGTTCCAGCTTACTATAGAAATCCCCCGGCCCAATAA 1578 0.4791 MVDPYVLGWIICAVLSLVALRNFAFARKNRCHSSETDATRRAENVTTAAGECRSSSRDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEQDRIVGELLQPGGYLKLIELGLEDCVEKIDAQLVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLSNVRLEQGTVTSLLEEKGVIKGVHYKTKDSQELSACAPLTVVCDGCFSNLRRSLCNPKVDVPSHFVGLILESCELPYANHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKVPSISNGEMTNYLKTVVAPQIPPELHDSFVAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPGLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGVRLISSASGIILPIIKAEGVRQMFFPATVPAYYRNPPAQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0400 525 Gene3D - 54 430 IPR036188 -
Gso6g0400 525 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Gso6g0400 525 SUPERFAMILY FAD/NAD(P)-binding domain 60 436 IPR036188 -
Gso6g0400 525 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gso6g0400 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Gso6g0400 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Gso6g0400 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Gso6g0400 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Gso6g0400 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Gso6g0400 525 MobiDBLite consensus disorder prediction 36 55 - -
Gso6g0400 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0400 Gso-Chr6 3721609 3725989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0400 43 523 Miscellaneous Gene Families AT1G58440 78.675 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0400 K00511 - gmx:100820031 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0801 14 8623067 8627649 Gso6g0400 6 3721609 3725989 PCT
Gso17g1975 17 39007683 39012396 Gso6g0400 6 3721609 3725989 PCT
Gso6g0400 6 3721609 3725989 Gso14g0801 14 8623067 8627649 PCT
Gso6g0400 6 3721609 3725989 Gso17g1975 17 39007683 39012396 PCT