Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0397 ATGAAGCGCATGAATGAGAGTAACAACACCGATGATGGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCGCCCCACATGAAAATGGAGGTTACTTCGGCAGCCACTGTTTCCGACAACAATGTTCCGACAACCTTCTACATGTCCCCTTCTCACATGTCCAACTCCGGAATGTGTTACAGTGTCGGGGAAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTCTCAAGTCTGATGGGTCACTTGGTATCTTGGAAGCTCTCAATAGATCACAAACGCAAGTGATGGTGCCAACTTCGTCTCCGAAATTGGAGGACTTCTTAGGTGGTGCAACTATGGGAACTCACGAATATGGGAACCACGAGAGAGGTTTGAGCCTAGACAGCATCTATTATAACTCACAAAACGCAGAGGCTCAACCCAACAGAAACCTTCTTTCACATCCCTTCAGGCAACAAGGGCATGTGAATGTCGAAACACACCCTTATTACTCTGTATTTGCTTGTCGAGGTTTGTATCAGGCACCGTCGGAGGAAGAAGCAACAAAGGAAACGCACGTTTCAGTAATGCCTCAAATGACAGGAGGAGGTTTGCAAAACTGGGTAGCTCCAACAAGGGAGTATTCAACTCATCAGCAGATTCTGGAGCAGCAAATGAACTGTGGCATTTGGAATGAGAGAAGTGGGGTATCTGTTGGAACTGTGGGGTGTGGAGAGTTGCAATCTCTAAGCTTATCTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCTCCTTCTGGAACAGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGCTAAACTTGGTCAGAAGCAGCCTGTGCATAGAAAATCTATTGACACATTTGGGCAAAGAACGTCGCAGTATAGAGGCGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGTATATTTGGGAGGTTATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCAACGCACATAAACTTTTCGATAGAAAATTACCAAGTTCAACTTGAGGAAATGAAGAACATGAGCAGACAGGAATACGTTGCACACTTGAGAAGAAAAAGCAGCGGATTTTCTAGAGGTGCTTCAATATACAGAGGGGTCACAAGGCACCACCAACATGGAAGATGGCAAGCGAGGATAGGCAGAGTTGCTGGGAACAAAGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATACGATATAGCCGCAATAAAATTCCGCGGCGCGAATGCAGTCACAAACTTTGACATTTCAAGATACGATGTCGAGAGAATCATGGCCAGTAGTAATCTCCTCGCTGGGGAGCTTGCAAGGCGAAATAAAGATAACGATCCAAGAAACGAGGCCATTGACTACAACAAGAGTGTAGTAACAAGTGTGAACAATGGGGAAACGGTTCAAGTTCAAGCAAGAAACAACAATGAAAATGATTCGGAGTGGAAGATGGTTTTATTTAATCACCCTTTACAGCAACAGGCAAATGGCAGTGACCATAAAATAATGAACTGCGGAAATTCCAGGAACAGTGCATTTTCTATGGCCCTACAAGATCTCATTGGGGTTGATTCGGTGGGTTCTGAGCAGCATAATATGCTGGATGATTCTAGCAAAATTGGGACTCATTTTTCAAACCCGTCCTCGCTGGTGACAAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAATGGGTCCCTCGCTTCTGTTCCCAAAGCCTCCTCCAATGGAAACAAAGATTGTGAACCCCATTGGTACGAGTGTTACCTCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCATCTCCTGCTATCTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA 1983 0.4539 MKRMNESNNTDDGNNHNWLGFSLSPHMKMEVTSAATVSDNNVPTTFYMSPSHMSNSGMCYSVGENGNFHSPLTVMPLKSDGSLGILEALNRSQTQVMVPTSSPKLEDFLGGATMGTHEYGNHERGLSLDSIYYNSQNAEAQPNRNLLSHPFRQQGHVNVETHPYYSVFACRGLYQAPSEEEATKETHVSVMPQMTGGGLQNWVAPTREYSTHQQILEQQMNCGIWNERSGVSVGTVGCGELQSLSLSMSPGSQSSCVTAPSGTDSVAVDAKKRGHAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYQVQLEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDISRYDVERIMASSNLLAGELARRNKDNDPRNEAIDYNKSVVTSVNNGETVQVQARNNNENDSEWKMVLFNHPLQQQANGSDHKIMNCGNSRNSAFSMALQDLIGVDSVGSEQHNMLDDSSKIGTHFSNPSSLVTSLSSSREASPEKMGPSLLFPKPPPMETKIVNPIGTSVTSWLPSPTVQMRPSPAISLSHLPVFAAWTDT* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0397 660 MobiDBLite consensus disorder prediction 588 602 - -
Gso6g0397 660 CDD AP2 297 363 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 Gene3D AP2/ERF domain 400 460 IPR036955 GO:0003700|GO:0006355
Gso6g0397 660 Gene3D AP2/ERF domain 297 366 IPR036955 GO:0003700|GO:0006355
Gso6g0397 660 ProSiteProfiles AP2/ERF domain profile. 298 364 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 SUPERFAMILY DNA-binding domain 297 366 IPR016177 GO:0003677
Gso6g0397 660 Pfam AP2 domain 298 356 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 Pfam AP2 domain 400 450 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 ProSiteProfiles AP2/ERF domain profile. 400 458 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 658 - -
Gso6g0397 660 CDD AP2 399 460 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 PRINTS Ethylene responsive element binding protein signature 299 310 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 PRINTS Ethylene responsive element binding protein signature 440 460 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 MobiDBLite consensus disorder prediction 588 615 - -
Gso6g0397 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 658 - -
Gso6g0397 660 SMART rav1_2 298 370 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 SMART rav1_2 400 464 IPR001471 GO:0003700|GO:0006355
Gso6g0397 660 SUPERFAMILY DNA-binding domain 399 460 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0397 Gso-Chr6 3679727 3684308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0397 1 484 AP2-EREBP Transcription Factor Family AT4G37750 52.830 5.19e-162 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso6g0397 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0397 K09285 - gmx:100802454 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0416 4 3845877 3850054 Gso6g0397 6 3679727 3684308 GST
Gso14g0790 14 8464449 8469720 Gso6g0397 6 3679727 3684308 PCT
Gso17g1978 17 39062075 39066921 Gso6g0397 6 3679727 3684308 PCT
Gso6g0397 6 3679727 3684308 Gso14g0790 14 8464449 8469720 PCT
Gso6g0397 6 3679727 3684308 Gso17g1978 17 39062075 39066921 PCT