Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0393 ATGTTTTTCCACCAAGATGAAGCGGTTCAGTACCCGTGCACTCCAGTTCACGAGACCATGCTGACCGAAAGCGAAATAGAAGACTTGTTTTCTCTCATTAACCATTCGACAGACCCGGCTAGCCCGGGGTCCGGTTCCCAGGGTTCAAACCGGGTGGTTTACTCGCCAGAGGAACGAAAGCTGAGACGCATGCAATCGAACCGGGAATCGGCCCGAAGGTCCCGCTACAGAAAGAAGCAGCATATAGAGAACCTCACGAGCCAACTGAACCGGTTGAGAATCCAAAACCGATTACTCAAAAACCAACTCGCCTCCACCATGCACCAGAACCTCCTACTATCCCTACATAACGACCATCTTAAATCCGAATCCGTTGCCCTTATGGCCACACTTTCGGATCTGTGTGGGATTTTAGGCACCATGCTTTCACATTAA 435 0.5034 MFFHQDEAVQYPCTPVHETMLTESEIEDLFSLINHSTDPASPGSGSQGSNRVVYSPEERKLRRMQSNRESARRSRYRKKQHIENLTSQLNRLRIQNRLLKNQLASTMHQNLLLSLHNDHLKSESVALMATLSDLCGILGTMLSH* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0393 144 SMART brlzneu 55 126 IPR004827 GO:0003700|GO:0006355
Gso6g0393 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 62 77 IPR004827 GO:0003700|GO:0006355
Gso6g0393 144 MobiDBLite consensus disorder prediction 34 78 - -
Gso6g0393 144 MobiDBLite consensus disorder prediction 55 71 - -
Gso6g0393 144 PANTHER BZIP TRANSCRIPTION FACTOR 18 144 - -
Gso6g0393 144 CDD bZIP_plant_GBF1 60 109 IPR045314 GO:0003700|GO:0006355
Gso6g0393 144 SUPERFAMILY Leucine zipper domain 59 113 IPR046347 GO:0003700|GO:0006355
Gso6g0393 144 Gene3D - 57 110 - -
Gso6g0393 144 Coils Coil 82 109 - -
Gso6g0393 144 Pfam Basic region leucine zipper 56 104 IPR004827 GO:0003700|GO:0006355
Gso6g0393 144 MobiDBLite consensus disorder prediction 34 53 - -
Gso6g0393 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 57 104 IPR004827 GO:0003700|GO:0006355
Gso6g0393 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 18 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0393 Gso-Chr6 3632092 3632526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0393 15 138 bZIP Transcription Factor Family AT3G49760 37.405 1.14e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso6g0393 bZIP_2 3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0393 - - gmx:102661984 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0781 14 8283622 8284618 Gso6g0393 6 3632092 3632526 PCT
Gso17g1987 17 39208155 39208592 Gso6g0393 6 3632092 3632526 PCT
Gso6g0393 6 3632092 3632526 Gso14g0781 14 8283622 8284618 PCT
Gso6g0393 6 3632092 3632526 Gso17g1987 17 39208155 39208592 PCT