Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0427 ATGGAAAACTTGCAGAAGATCAATGCAGGAAACCACTCTGAGACAACAAACAAGGGATGCGTTTCCACTGAAGAAGAAAGCATCATAATAAACCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCTATGGGAGAAGGGAAAATTCTTCCAAAGACTGGTAAAGTCTTTGCATCTGCAACAGAACGTACGCAAAGCTGGAACGGTATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTTGCCTACGAGGTTACTGCTGTAGTTCGGATATTTGGGAACAATATTACAACTTCTGATGTAAGGGCTACTTTGTATGTTCAAGCACCAGATTTTCGGGAGCAGTATATAGGCATTGCCAATGTACAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTTGTAGTTTACTTAGAAGGCCCTCCTCCAGGCGCTGACATTCTTGTCAATACTTTGGTTATAAAACATGCAGATAAAACACCACCTTCAACACCCCCGGATTGTGAGGGTGCTGCTTTTGGTGTTAATATAATTGAAAACAGTAATCTGGCCAATGGCACCAATGGATGGTTTCCTCTGGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTATAATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCATGAATCCTTAAGTGGACGCCACATCCTTGTAACCAATCGTACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTTTTTTTAACTTATCAAGTATCTGCTTGGGTCCGAATTGGTTCTAGATCAACAGGGCCTCAGAATGTGAATGTTGCCCTCAGTGTTGATAACCAGTGGGTCAATGGAGGACAAGTTGAGGTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTTTAGACTTGATGGTTGCTGGACTTCAGATTTTTGCTGTTGATAGACATGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATCCGTAAGCGGGAAATCATCCTGAAATTCTCTGGGCTGGACTCAATTGGAAATCTTGGAACCTTGGTGAGAGTCAAACAAGTACAAAACGATTTCCCCATTGGATCGTGCATTAGTAGAAGCAACATTGACAACGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTCGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCCGATGAAATGTTAGACTTATGTCAGAAGAACAAGATAGACACCCGGGGTCATTGCATCTTCTGGGATGTGGACGGCACCGTTCAGCAATGGATCAAATCACTGAATAAAAATGATTTGATGACAGCTGTCCAAAACCGCTTAAATGGCTTATTAACTCGCTACATAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTACGTTTTATCAAGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGATTGCACACCAATTAGATCCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACTAGATCATCACCAGAAAAGTACATTCAACATGTTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAAATGGGAACTCTTGGCATACCAATATGGTTCACTGAGCTTGATGTGTCTTCCACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTGCGGGAAGCTTTGGCACACCCTGCTATAGATGGTGTTATGCTATGGGGATTTTGGGAGTTGTTTATGAGCAGGGAAAATTCGCACTTAGTGAATGCAGAAGGGGAACTCAACGAAGCTGGGAAAAGATACCTTGCTCTCAAACAAGAGTGGTTGTCTCATAGCCATGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTTGAAGTTGTGACCTTAGCAAAGAAAGTTACCAAGACCTTCGTTGTTGACAAGGGTGACTCATCACTGGTGGTATCAATCGATTTATAA 2226 0.4223 MENLQKINAGNHSETTNKGCVSTEEESIIINPQFDDGLNNWSGRGCKIALHDSMGEGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNITTSDVRATLYVQAPDFREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGADILVNTLVIKHADKTPPSTPPDCEGAAFGVNIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGRHILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSRSTGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGLDLMVAGLQIFAVDRHARFKYLRRQTDKIRKREIILKFSGLDSIGNLGTLVRVKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDGTVQQWIKSLNKNDLMTAVQNRLNGLLTRYIGKFKHYDVNNEMLHGTFYQDRLGKDIRANMFKIAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQHVLDLQEQGAPVGGIGIQGHIDSPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYNVEVVTLAKKVTKTFVVDKGDSSLVVSIDL* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0427 741 Gene3D - 193 354 - -
Gso4g0427 741 Gene3D - 21 179 - -
Gso4g0427 741 SUPERFAMILY Galactose-binding domain-like 26 181 IPR008979 -
Gso4g0427 741 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 15 741 - -
Gso4g0427 741 SUPERFAMILY (Trans)glycosidases 392 692 IPR017853 -
Gso4g0427 741 Pfam Glycosyl hydrolase family 10 398 655 IPR001000 GO:0004553|GO:0005975
Gso4g0427 741 PANTHER GLYCOSYL HYDROLASE 15 741 IPR044846 GO:0004553|GO:0005975
Gso4g0427 741 Coils Coil 667 687 - -
Gso4g0427 741 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 389 684 IPR001000 GO:0004553|GO:0005975
Gso4g0427 741 SMART glyco_10 435 685 IPR001000 GO:0004553|GO:0005975
Gso4g0427 741 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 612 622 IPR031158 -
Gso4g0427 741 SUPERFAMILY Galactose-binding domain-like 196 356 IPR008979 -
Gso4g0427 741 Gene3D Glycosidases 389 695 - -
Gso4g0427 741 Pfam Carbohydrate binding domain 27 164 IPR003305 GO:0016798
Gso4g0427 741 Pfam Carbohydrate binding domain 198 341 IPR003305 GO:0016798
Gso4g0427 741 PRINTS Glycosyl hydrolase family 10 signature 466 478 IPR001000 GO:0004553|GO:0005975
Gso4g0427 741 PRINTS Glycosyl hydrolase family 10 signature 548 559 IPR001000 GO:0004553|GO:0005975
Gso4g0427 741 PRINTS Glycosyl hydrolase family 10 signature 580 592 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0427 Gso-Chr4 4022936 4026795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0427 21 741 Glycoside Hydrolase AT1G58370 73.582 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0427 - - gmx:100801147 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0427 4 4022936 4026795 Gso4g0427 4 4022936 4026795 ECH
Gso4g0427 4 4022936 4026795 Gso6g0406 6 3797944 3802068 GST
Gso17g1968 17 38865677 38871661 Gso4g0427 4 4022936 4026795 PCT
Gso4g0427 4 4022936 4026795 Gso17g1968 17 38865677 38871661 PCT