Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0423 ATGGGGAGGGCACCTTGCTGTGACAAATCAAACGTGAAGAAAGGCCCTTGGTCGCCAGATGAAGATGCCAAACTCAAATCCTACATCGACCAGCACGGAACCGGAGGGAACTGGATTGCTTTGCCACAAAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAATATCAAACACGGTGGTTTCTCTGAAGAAGAAGACAACATCATATGCAGCCTCTACGTTTGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCGCCGTAAGGAACTACAGGCACGAAACAAAGGAAACGGTGTCGTTGAGCACGAGAACAATTCCTCACTCTTGCTTCAGGAAAACAGTGCTCAACAATTACATCCATGTTGGCCACAGATTCCTGCAGTGTTGCCACTTTCACCCTACACAAACCAAAGTCCAAGTTTCAACGACCAAGACTCTATTAGAAAGCTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACGCATCCTTGACGGGTTGAATCTTCAGTTCCCACATGGTTCTCTCTCATCAACACAACTTCTTCAAGAGGAGCAAGTCCATTTTGTTTCTTCTGCAGGGTGCATGAACTCTATTGGCAACAACCAAGTACAGTTTGGTCAGAGCAATGAGTACCGTGCTGAGTTGGTGCAAGGACAAAGCAGTTTCACTACCACTACAGTTGGGGAAATGGTTTCTGCTAATGATTATTCTCAAAGGTTATTAGGTGGGTCGTTGGAGTTCTTCTATGGGGAGGAAATGATTACCGATAAGATAATGGGTGGTGCTTGTGCTTCTTCAAGTTGTGGACAAAGTACTGATTGGGGTGAAACCAGTTCTCTGATTTATCCTCCTCTTGTTGCTTCGAATTACGAGGGTGTGCGTCAAGAGATGCCACGAGAATGTGTTTTTCAAGAGTTAAGCTACCCGGGGGCACAATAG 1053 0.4606 MGRAPCCDKSNVKKGPWSPDEDAKLKSYIDQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVCIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKRRKELQARNKGNGVVEHENNSSLLLQENSAQQLHPCWPQIPAVLPLSPYTNQSPSFNDQDSIRKLLIKLGGRFSDDYQRILDGLNLQFPHGSLSSTQLLQEEQVHFVSSAGCMNSIGNNQVQFGQSNEYRAELVQGQSSFTTTTVGEMVSANDYSQRLLGGSLEFFYGEEMITDKIMGGACASSSCGQSTDWGETSSLIYPPLVASNYEGVRQEMPRECVFQELSYPGAQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0423 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gso4g0423 350 Gene3D - 6 68 - -
Gso4g0423 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gso4g0423 350 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso4g0423 350 CDD SANT 71 111 IPR001005 -
Gso4g0423 350 CDD SANT 16 62 IPR001005 -
Gso4g0423 350 PANTHER OS09G0431300 PROTEIN 1 339 - -
Gso4g0423 350 SMART sant 13 64 IPR001005 -
Gso4g0423 350 SMART sant 67 115 IPR001005 -
Gso4g0423 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso4g0423 350 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso4g0423 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso4g0423 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso4g0423 350 Gene3D - 70 143 - -
Gso4g0423 350 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0423 Gso-Chr4 3963776 3965578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0423 1 286 MYB Transcription Factor Family AT3G49690 50.949 1.56e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g0423 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0423 K09422 - gmx:100790407 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0423 4 3963776 3965578 Gso4g0423 4 3963776 3965578 ECH
Gso4g0423 4 3963776 3965578 Gso6g0404 6 3769552 3771514 GST
Gso14g0806 14 8673300 8675424 Gso4g0423 4 3963776 3965578 PCT
Gso17g1971 17 38960604 38962762 Gso4g0423 4 3963776 3965578 PCT
Gso4g0423 4 3963776 3965578 Gso14g0806 14 8673300 8675424 PCT
Gso4g0423 4 3963776 3965578 Gso17g1971 17 38960604 38962762 PCT