LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g0416	ATGAAGCGCATAAATGAGAGTAACAATACCGATGATGGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGCTACTTCAGCACCCACTGTTCCGACAACCTTCTACATGTCCCCTTCTCAATCTCACTTGTCCAACTTCGGAATGTGTTACGGTGTCGGAGAAAATGGTAACTTCCATTCTCCACTTACGGTTATGCCTCTCAAGTCTGATGGGTCACTTTGTATCTTGGAAGCTCTCAAAAGATCACAAACGCAAGTGATGGTGCCAACTTCGTCTCCGAAATTGGAGGACTTTCTAGGTGGTGCAACTATGGGAACTCACGAATATGGAAGCCACGAGAGAGGTTTGAGCCTAGACAGCATCTATTATAACTCCCAAAACGCAGAGGCTCAACCCAACAGAGACCTTCTTTCACAACCCTTCAGGCAACAAGGTCATATGAGTGTCCAAACACACCCTTATTACTCAGGCCTTGCTTGCCATGGTTTATATCAAGCACCGTTGGAGGAAGAAACAACAAAGGAAACGCACGTGTCGGATTGCAGCTCCCTAATGCCTCAAATGACAGAAGGCTTGAAAAACTGGGTGGCTCCAACAAGGGAGTTTTCAACTCACCAGCAGGTTTTGGAGCAGCAAATGAATTGTGGCATGGGGAATGAGAGAAATGGTGTGTCTTTAGGATCTGTGGGGTGTGGAGAGTTACAGTCTCTAAGCTTATCTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCTCCTTCTGGAACAGATTCTGTTGCTGTGGATGCAAAGAAGAGAGGGCATGCTAAACTTGGTCAGAAGCAGCCTGTGCATAGAAAATCTATCGACACATTTGGGCAAAGAACCTCGCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACTAGGAAAGGACGACAAGTGTATTTGGGGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGATAGAGAATTACCAAGTTCAACTTGAGGAAATGAAGAACATGAGCAGACAGGAATACGTTGCACACTTGAGAAGAAAAAGCAGCGGGTTTTCTAGAGGTGCTTCAATATACAGAGGGGTCACAAGGCATCACCAACATGGAAGATGGCAAGCGAGGATAGGCAGAGTTGCTGGGAACAAAGACCTTTACCTTGGGACGTTCAGCACCCAAGAGGAAGCAGCAGAAGCATACGATGTAGCGGCGATCAAATTTCGCGGCGCAAATGCAGTCACAAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCCAGTAGCAATCTCCTCGCTGGGGAGCTTGCAAGGCGTAAGAAAGATAACGATCCTAGAAACAAGGACATAGACTACAACAAGAGTGTAGTAACAAGTGTGAACAATGAGGAAACGGTTCAAGTTCAAGCAGGAAACAACAATAATGAAAACGACTCAGAGTGGAAGATGGTTTTATTTAACCACCCTTCACAGCAGCAACAGGCAAATGGCAATGGCAGTGACCAAAAAATAATGAACTGTGGAAATTACAGAAACAGTGCATTTTCTATGGCCCTACAAGATCTTATTGGGATTGATTCGGTGGGTTCTGGGCAGCATAATATGCTGGACGAGTCTAGCAAAATTGGGACTCATTTTTCAAACACGTCATCGCTGGTGACAAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAAGGGGTCCCTCGCTTCTGTTCCCAATGCCTCCAATGGAAACAAAGATTGTGAACCCCATTGGTACCAGTGTTACCTCTTGGCTACCCTCACCAACGGTTCAAATGAGGCCATCTCCTGCTATCTCTTTGTCTCACTTGCCAGTTTTTGCTTCTTGGACTGATACTTAA	1992	0.4558	MKRINESNNTDDGNNHNWLGFSLSPHMKMEATSAPTVPTTFYMSPSQSHLSNFGMCYGVGENGNFHSPLTVMPLKSDGSLCILEALKRSQTQVMVPTSSPKLEDFLGGATMGTHEYGSHERGLSLDSIYYNSQNAEAQPNRDLLSQPFRQQGHMSVQTHPYYSGLACHGLYQAPLEEETTKETHVSDCSSLMPQMTEGLKNWVAPTREFSTHQQVLEQQMNCGMGNERNGVSLGSVGCGELQSLSLSMSPGSQSSCVTAPSGTDSVAVDAKKRGHAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYQVQLEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASSNLLAGELARRKKDNDPRNKDIDYNKSVVTSVNNEETVQVQAGNNNNENDSEWKMVLFNHPSQQQQANGNGSDQKIMNCGNYRNSAFSMALQDLIGIDSVGSGQHNMLDESSKIGTHFSNTSSLVTSLSSSREASPEKRGPSLLFPMPPMETKIVNPIGTSVTSWLPSPTVQMRPSPAISLSHLPVFASWTDT*	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g0416	663	ProSiteProfiles	AP2/ERF domain profile.	400	458	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	Gene3D	AP2/ERF domain	400	460	IPR036955	GO:0003700\|GO:0006355
	Gso4g0416	663	Gene3D	AP2/ERF domain	297	366	IPR036955	GO:0003700\|GO:0006355
	Gso4g0416	663	Pfam	AP2 domain	400	450	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	Pfam	AP2 domain	298	356	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	PRINTS	Ethylene responsive element binding protein signature	299	310	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	PRINTS	Ethylene responsive element binding protein signature	440	460	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	14	661	-	-
	Gso4g0416	663	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	14	661	-	-
	Gso4g0416	663	CDD	AP2	399	460	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	CDD	AP2	297	363	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	SMART	rav1_2	400	464	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	SMART	rav1_2	298	370	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	ProSiteProfiles	AP2/ERF domain profile.	298	364	IPR001471	GO:0003700\|GO:0006355
	Gso4g0416	663	SUPERFAMILY	DNA-binding domain	399	460	IPR016177	GO:0003677
	Gso4g0416	663	SUPERFAMILY	DNA-binding domain	297	366	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso4g0416	Gso-Chr4	3845877	3850054	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso4g0416	1	484	AP2-EREBP Transcription Factor Family	AT4G37750	52.710	3.10e-161	473

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Gso4g0416		AP2	1.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g0416	K09285		-	gmx:100787223	1333.16

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0416	4	3845877	3850054	Gso4g0416	4	3845877	3850054	ECH
	Gso4g0416	4	3845877	3850054	Gso6g0397	6	3679727	3684308	GST
	Gso14g0790	14	8464449	8469720	Gso4g0416	4	3845877	3850054	PCT
	Gso17g1978	17	39062075	39066921	Gso4g0416	4	3845877	3850054	PCT
	Gso4g0416	4	3845877	3850054	Gso14g0790	14	8464449	8469720	PCT
	Gso4g0416	4	3845877	3850054	Gso17g1978	17	39062075	39066921	PCT