Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0402 ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACCGCAGATAACCGAGTGTACCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTCAGCAACTATAACTCTTTTGAAGGAGTTCTTTACTGCAGGCCACACTTTGACCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCGGGGAAGAGAAACATGCAGCAACCAAAGTCTCAAGTATGTTTGGTGGAACTAGAGATAAATGTGCGGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTTACCGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAACTACATTGCACACGAAGGCAAACTCTACTGCAAGCACCACCACATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAACTTGAAGGTGACCATGAGAAGAGTACAGAGGAAGAGAAAATCAACGGTGAAGTGGTTGCAGCTGAGACATGA 591 0.4382 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGEEKHAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKSTEEEKINGEVVAAET* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0402 196 Pfam LIM domain 109 163 IPR001781 -
Gso4g0402 196 Pfam LIM domain 10 64 IPR001781 -
Gso4g0402 196 PANTHER OS06G0237300 PROTEIN 1 184 IPR045268 GO:0051015
Gso4g0402 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gso4g0402 196 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 184 - -
Gso4g0402 196 SMART lim_4 108 160 IPR001781 -
Gso4g0402 196 SMART lim_4 9 61 IPR001781 -
Gso4g0402 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Gso4g0402 196 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gso4g0402 196 CDD LIM2_SF3 109 169 - -
Gso4g0402 196 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Gso4g0402 196 MobiDBLite consensus disorder prediction 173 196 - -
Gso4g0402 196 Gene3D Cysteine Rich Protein 4 74 - -
Gso4g0402 196 Gene3D Cysteine Rich Protein 104 173 - -
Gso4g0402 196 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gso4g0402 196 CDD LIM1_SF3 6 68 - -
Gso4g0402 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Gso4g0402 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0402 Gso-Chr4 3664982 3669382 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso4g0402 LIM 4.5e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0402 4 3664982 3669382 Gso4g0402 4 3664982 3669382 ECH
Gso4g0402 4 3664982 3669382 Gso6g0381 6 3540544 3543139 GST
Gso14g0769 14 8116996 8119069 Gso4g0402 4 3664982 3669382 PCT
Gso17g1999 17 39334356 39336309 Gso4g0402 4 3664982 3669382 PCT
Gso4g0402 4 3664982 3669382 Gso14g0769 14 8116996 8119069 PCT
Gso4g0402 4 3664982 3669382 Gso17g1999 17 39334356 39336309 PCT