Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0399 ATGTTGTGCGCTTGTTCTTCCGGGGAGCAATTCATATTCGAAGAGCCGCCGCACTCGCCGGAGTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCGGAGAATGGGAACCTAAATTCGATGAAACTCAAGTAGAAGAAGCTGAATCTATTCTTAAAGAAGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTCGATGCTGCACTTCAAGTATTTCAGGGTATAGACATCAAGGGTTTGGCCCCAAGAATGATCAAGGCTATTGCCGAAAGAACCAAGCAAAGAAAACCGCGTTCCAAGGCAGATATCATGGTTCCGAATGTGATGTCATTGCGTTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGATCGTTGGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGTTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTAGATGAAGCTGTCACTGCATATCGTCGTGCTCTTGTCAAGCCATGGAATTTGGAGCCAAGAAGGTTGGCTGCTGTACAAAAAGATTTAGCTATGATACTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCTGGTGTGGAGTAAAACTTCACCCAAGAGTAGTGTTGAAGAAGCAATACTTATGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACGGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGTTATTTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGAGGTAGCATTGAACCTTTTGAGGAAAGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCTTAGACCCTCACCATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTGATCTAGCTAAGCACCAAAATGAGCATTTTCTTAGTCAAGGCCATAAATTTCTTGGCATCTGCTATGGGGCTGCCGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTATGCTGCTGTAAGTGAAAATGATGACCTGGAAGTGATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGATGTCCTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGCTATTAGCACTCATAGTATCTGCACAGCAGCGATTTAAGGATGCTGAAACTATAGTTGATTGTGCTTTAGATGAGTCTGGTGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCGGCAACCCAAGCAAGCAATAGAGACATATAAGATCTTGCTAGCGCTAATTCAGGCAAAAAAGGAGCTTTTGATTCAAGATAACAACATTGATCAAGGACAAACATTCAGTCATGAGGCATTAACAGAAAGGAAGCTGGAAATGGAAGCATGGCAGGATTTGGCTACTATTTATACAGATGTCGATTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCAGTTGATAGAATTTTTCTCTCCAAGAAGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCGATTGCAAGAAGTTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTACAAGAATTTAAATAA 2148 0.4218 MLCACSSGEQFIFEEPPHSPESLATRDFSASGLSSRTGEWEPKFDETQVEEAESILKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLAPRMIKAIAERTKQRKPRSKADIMVPNVMSLRSVSLLLEAILLKARSLEELGQCIEAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHKALELFPSLWIKAGFLDEAVTAYRRALVKPWNLEPRRLAAVQKDLAMILLYGGVEVSLPSQLLVWSKTSPKSSVEEAILMLLILMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEQILPVIYSRAERWYFLALCYSAAGHDEVALNLLRKACGSSEANHRPHFPSFLFGAKLCSLDPHHAHEGINFSREVIDLAKHQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNYAAVSENDDLEVIFSLGLENAIQRNLDAAYNNIMMSSDMTVGSSRGWQLLALIVSAQQRFKDAETIVDCALDESGGMDQLELLRLKAVLQIAQRQPKQAIETYKILLALIQAKKELLIQDNNIDQGQTFSHEALTERKLEMEAWQDLATIYTDVDSLLDAKTCVDKAQLIEFFSPRSWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQEFK* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0399 715 Coils Coil 57 77 - -
Gso4g0399 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Gso4g0399 715 Pfam Tetratricopeptide repeat 48 90 - -
Gso4g0399 715 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Gso4g0399 715 SUPERFAMILY TPR-like 425 599 IPR011990 GO:0005515
Gso4g0399 715 SUPERFAMILY TPR-like 563 706 IPR011990 GO:0005515
Gso4g0399 715 SUPERFAMILY TPR-like 48 345 IPR011990 GO:0005515
Gso4g0399 715 PANTHER PROTEIN NPGR1 1 715 - -
Gso4g0399 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Gso4g0399 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Gso4g0399 715 SMART tpr_5 475 508 IPR019734 GO:0005515
Gso4g0399 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Gso4g0399 715 SMART tpr_5 318 351 IPR019734 GO:0005515
Gso4g0399 715 Gene3D Tetratricopeptide repeat domain 43 413 IPR011990 GO:0005515
Gso4g0399 715 Gene3D Tetratricopeptide repeat domain 423 711 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0399 Gso-Chr4 3638692 3642846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0399 1 714 Calmodulin-binding Proteins AT1G27460 59.388 0.0 847
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0399 4 3638692 3642846 Gso4g0399 4 3638692 3642846 ECH
Gso4g0399 4 3638692 3642846 Gso6g0378 6 3519892 3523914 GST
Gso14g0765 14 8085828 8090396 Gso4g0399 4 3638692 3642846 PCT
Gso17g2002 17 39351534 39356984 Gso4g0399 4 3638692 3642846 PCT
Gso4g0399 4 3638692 3642846 Gso14g0765 14 8085828 8090396 PCT
Gso4g0399 4 3638692 3642846 Gso17g2002 17 39351534 39356984 PCT