Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g2002 ATGTTGTGTGCTTGTTCAGGCGAGCAATTCAAATTTGAAGAGGCGCCACCGCGGTCACCTGACTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGCCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAAACACAAGTGGAAGATGTTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAGGGTATAGACATAAGGGCTTTGACCCCAAGGATGATAAGGGCTATAGCTGAAAGAACCAAACAAAGAAAATCACGTTCCAAGGTGGACAATGTGCTTCCTAATGTGATGTCAATGCATTCAGTTAGCCTGATTCTTGAGGCAATTTTGCTTAAATCTAAATCCTCTGAAGAACTTGGGCGATACACTGAGGCTGCAAAGGAGTGCAGAATTGTTGTGGATACAGTTGAGTCTGCTCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACGAAGCATTGGAGTTGCTTCCAAATCTATGGATGAAGGCAGGTTTGCTAGACGAAGTTGTCACTGCTTATCGGCGGGCTCTAGTCAAGCCTTGGAATTTGGAGCCGCAGAGGTTGGCCTGTGTACAAAAAGATTTAGCTACCACACTACTCTATGGAGGTGTTGAAGTAAACCTACTCCCTCAGTTGCAAGTGAATGGTATAACAACACCTATGAGCGGCACTGAAGAGGCTATACTTTTGCTATTAATACTCTCAGGAAAGATGGCACTTCAGGAAATAGATTGGGACCCTGAAATAATGGATCATCTTACATTTTCACTTTCAGTTACTGGGATGTTTGAATCATTGGCAGATCATGTAGAGAAGATCCTTCCGGGAGTTCATGATCGAGCTGAGCAGTGGTATTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAGAATGAAGTAGCCTTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACCCCATTTTCCTTCATTTTTGTTTGGTGCAAAGCTGTGTTCTCTAAATCCAAACCATGCTCGTGAAGGAATTAAATTTTCGCAGGAAGTTATTGATCTAGTGAAGCATCAAAATGAGCATTTTTTGAGTCAGGGCCAAAAATTTCTTGGCATTTGCCATGGAGCTGCTGCTAGAATATCTGTACTGGATTCTGAAAGAATTATATTTCAAAAAGAGTCTTTGAAGTTTCTAAAGGATGCTGCTCTGAATGGAAATAATAATGACCCGGAAGTGATGCTCACTCTTGGATTAGAAAATGCAATTCAAAGAAATCTAAATGCAGCTTATGACAATATAATGATGTACTCAGACATGATGGCTGGCAGCTCAAGAAGAGGTTGGCAGCTGTTAGCACTAACAGTATCAGCACAGCAGCGGTTTCAGGATGCCGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGCGATATAGATCAGTTAGAACTACTGAGACTGAAAGCTGTACTTCAAATTACTCAGCAGCAACCCAAGCAAGCAATTGAGACCTACAGAATCTTGCTAGCTGTAATTGAAGCAAGAAAAGAGCATTGGCTTCAAGCTAAGACATTCAGGCACGAGGCATTAACAGAACAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATGCAGATCTTTGTTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAATCCCAGTCGATAGAATTTTTTTCTCCCAGAAGTTGGCACATCACTGGTTTGTTGTTTGAAGCTCAATCTTTGCATAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAATAGAACCAGATTACATTCCCTGTATCATCTCCACTGCAAAATTGTTTCTTAAACTTGGCATTCCATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGACCCCACAAACCATGATGCATGGTTTAACCTTGGATTGGTTTCAAAAATGGAAGGCTCGTTACAACAAGCGGCAGACTGCTTTCAAGCTGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 2136 0.4176 MLCACSGEQFKFEEAPPRSPDSLATRDFSASGLSSRTGDWESKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIRALTPRMIRAIAERTKQRKSRSKVDNVLPNVMSMHSVSLILEAILLKSKSSEELGRYTEAAKECRIVVDTVESALPNGMPEGIGEDCKLQEMFHEALELLPNLWMKAGLLDEVVTAYRRALVKPWNLEPQRLACVQKDLATTLLYGGVEVNLLPQLQVNGITTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSVTGMFESLADHVEKILPGVHDRAEQWYFLALCYSAAGQNEVALNLLRKACGSSEAKHRPHFPSFLFGAKLCSLNPNHAREGIKFSQEVIDLVKHQNEHFLSQGQKFLGICHGAAARISVLDSERIIFQKESLKFLKDAALNGNNNDPEVMLTLGLENAIQRNLNAAYDNIMMYSDMMAGSSRRGWQLLALTVSAQQRFQDAETIVDFALDEAGDIDQLELLRLKAVLQITQQQPKQAIETYRILLAVIEARKEHWLQAKTFRHEALTEQKLEMEAWQDLATIYADLCSFLDAKACVDKSQSIEFFSPRSWHITGLLFEAQSLHKEAFVSFSVSLSIEPDYIPCIISTAKLFLKLGIPSLPIARSFLMNALRLDPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKFE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g2002 711 Coils Coil 57 77 - -
Gso17g2002 711 Gene3D Tetratricopeptide repeat domain 274 595 IPR011990 GO:0005515
Gso17g2002 711 ProSiteProfiles TPR repeat profile. 672 705 IPR019734 GO:0005515
Gso17g2002 711 Gene3D Tetratricopeptide repeat domain 27 249 IPR011990 GO:0005515
Gso17g2002 711 SUPERFAMILY TPR-like 432 597 IPR011990 GO:0005515
Gso17g2002 711 PANTHER PROTEIN NPGR1 1 710 - -
Gso17g2002 711 SUPERFAMILY TPR-like 54 345 IPR011990 GO:0005515
Gso17g2002 711 MobiDBLite consensus disorder prediction 24 38 - -
Gso17g2002 711 SUPERFAMILY TPR-like 570 702 IPR011990 GO:0005515
Gso17g2002 711 SMART tpr_5 602 635 IPR019734 GO:0005515
Gso17g2002 711 SMART tpr_5 318 351 IPR019734 GO:0005515
Gso17g2002 711 SMART tpr_5 672 705 IPR019734 GO:0005515
Gso17g2002 711 SMART tpr_5 513 546 IPR019734 GO:0005515
Gso17g2002 711 SMART tpr_5 568 601 IPR019734 GO:0005515
Gso17g2002 711 PANTHER PROTEIN NPG1 1 710 IPR043376 -
Gso17g2002 711 MobiDBLite consensus disorder prediction 12 39 - -
Gso17g2002 711 Gene3D Tetratricopeptide repeat domain 596 701 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g2002 Gso-Chr17 39351534 39356984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g2002 1 710 Calmodulin-binding Proteins AT1G27460 58.683 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g2002 K21843 - gmx:100795958 1399.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0765 14 8085828 8090396 Gso17g2002 17 39351534 39356984 GST
Gso17g2002 17 39351534 39356984 Gso4g0399 4 3638692 3642846 PCT
Gso17g2002 17 39351534 39356984 Gso6g0378 6 3519892 3523914 PCT
Gso4g0399 4 3638692 3642846 Gso17g2002 17 39351534 39356984 PCT
Gso6g0378 6 3519892 3523914 Gso17g2002 17 39351534 39356984 PCT