Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1993 ATGGTGGTGCTGTTGTCGGAGGAGGATGAATTCGACGAGGAGCCCGGCGAGGTAGTGGATTCAGCGCCGCCGCAGAAGGTCGGCGAAGAGAGAGAATTCAGTGGTTTCAAGAAGAAGCTTTTCAAACCCGGACAGGGATTGGAATTCCCCAACTTCGACGACGTCGTAACTGTTCGCTGTGTTGGAATTGGAACATTGCTCGATGGAACAACGTTTGATTCCACTAGGGAGAGGGATCAACCTAGGACGTTTGCTCTTGGAAAAGATGACATTGGTGCTGGTTTGGACCGTGCCATTATCACTATGAAGAAAGGGGAGGTGGCATTGTTCACGTTGCCCGGAGATGGTGGTGATGGCGATGTTTCGCTTGATTCCGACGACTCTTCGGCTGTGCGGTTTGAGGTGGAGCTCGTTTCGTGGATCACGGTGGTGGATGTTTGCAAAGATGGTGGAGTTGTCAAGAAAATTCTGGAGAAGGGGAGTGGCATTGAGCGCCCTGGTGATCTTGATGAAGTGCTTGTAAAGTATCGGGTGGTGCTTGGTGATGGCACTGTTGTTGTGGAGACGCTGGAAGGAGGAGTTGAGTTTCACATGAAGGATGGTCATCTTTTTCCTATATTGCCAAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTCTCCAACCCCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGTGGGCTCTGTTCAATTCCTCCGAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCAAGGTGATTAAAAAGATTTTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAAGGTGCAAATGTTACTGTGAGCTTCACAGCTATGCTAGAAGATGGCACTGTATTTGAGAAAAGAGGAATTGGTGAAACACTACCCTTGGAATTCATAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCTGTGGCAACAATGAAGAAGGGTGAGAGGGCGATAATTAGCATACATCCTGATTATGCATTTGGAGATGTTGAAGTGAGACGAGATATTGCTATTGTGCCACCGGGCTCAAATGTAGTCTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGATGAAAGAAGAAGGAAATGTATTATTTAAAGTTGGCAATTATCAGCGAGCAGGAAAGAAATATGAAAAGGCTGCTGATTTTGTTGATGAAGATGGATCCTTTGGGTTTGATGAGCAAAAGCAAGCTCAGACACTGAAAGTGTCATGCTGGTTGAATAGTGCAGCTTGTAGCCTTAAACTTGATGACTTTCCTGGAGCAATCAAGCTATGTTCACAGGTGCTTGATGTTGAATTTTGCAATGTGAAAGCTTTTTACAGACGAGCACAAGCATATATAGAAACTGGAGATTATCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGTGGTGGACCCACAAAACAGAGATGTTAAGGTAATTCAGAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTATATGAAAACATGCTTGCACGTAAAACAAAGGACCCATCTATGGCTATAAAGAGATTGAAGGTAGAGAAAGATCAGGGGGAAAATGAAGAGGTTGCAAGAATGGAAATTGACGAAGTTGCTGATAGCGCAGTGATTCAATAG 1752 0.4429 MVVLLSEEDEFDEEPGEVVDSAPPQKVGEEREFSGFKKKLFKPGQGLEFPNFDDVVTVRCVGIGTLLDGTTFDSTRERDQPRTFALGKDDIGAGLDRAIITMKKGEVALFTLPGDGGDGDVSLDSDDSSAVRFEVELVSWITVVDVCKDGGVVKKILEKGSGIERPGDLDEVLVKYRVVLGDGTVVVETLEGGVEFHMKDGHLFPILPKVIMTMTRGEKAELILQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVINVTGDSKVIKKILKEGEGAFTANEGANVTVSFTAMLEDGTVFEKRGIGETLPLEFITDEEQVITGLDRAVATMKKGERAIISIHPDYAFGDVEVRRDIAIVPPGSNVVYDIEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKVGNYQRAGKKYEKAADFVDEDGSFGFDEQKQAQTLKVSCWLNSAACSLKLDDFPGAIKLCSQVLDVEFCNVKAFYRRAQAYIETGDYLLADVDIKKALVVDPQNRDVKVIQKKLKQLQADSDKKDAKLYENMLARKTKDPSMAIKRLKVEKDQGENEEVARMEIDEVADSAVIQ* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1993 583 SUPERFAMILY TPR-like 391 541 IPR011990 GO:0005515
Gso17g1993 583 Coils Coil 516 536 - -
Gso17g1993 583 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Gso17g1993 583 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 169 260 IPR001179 GO:0003755
Gso17g1993 583 SUPERFAMILY FKBP-like 9 142 - -
Gso17g1993 583 SMART tpr_5 446 479 IPR019734 GO:0005515
Gso17g1993 583 SMART tpr_5 480 513 IPR019734 GO:0005515
Gso17g1993 583 SMART tpr_5 397 430 IPR019734 GO:0005515
Gso17g1993 583 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 138 IPR001179 GO:0003755
Gso17g1993 583 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 376 IPR001179 GO:0003755
Gso17g1993 583 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 257 IPR001179 GO:0003755
Gso17g1993 583 SUPERFAMILY FKBP-like 145 260 - -
Gso17g1993 583 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 380 IPR001179 GO:0003755
Gso17g1993 583 SUPERFAMILY FKBP-like 266 397 - -
Gso17g1993 583 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 141 IPR001179 GO:0003755
Gso17g1993 583 MobiDBLite consensus disorder prediction 1 27 - -
Gso17g1993 583 Gene3D - 260 384 IPR046357 GO:0003755
Gso17g1993 583 PANTHER PEPTIDYLPROLYL ISOMERASE 6 266 - -
Gso17g1993 583 PANTHER PEPTIDYLPROLYL ISOMERASE 376 564 - -
Gso17g1993 583 PANTHER PEPTIDYLPROLYL ISOMERASE 262 379 - -
Gso17g1993 583 Gene3D Tetratricopeptide repeat domain 385 540 IPR011990 GO:0005515
Gso17g1993 583 Gene3D - 26 143 IPR046357 GO:0003755
Gso17g1993 583 MobiDBLite consensus disorder prediction 1 17 - -
Gso17g1993 583 Gene3D - 144 259 IPR046357 GO:0003755
Gso17g1993 583 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 262 379 - -
Gso17g1993 583 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 376 564 - -
Gso17g1993 583 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1993 Gso-Chr17 39271956 39278930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1993 26 544 Calmodulin-binding Proteins AT3G25230 52.581 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1993 K09571 - gmx:100793684 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0777 14 8191108 8197824 Gso17g1993 17 39271956 39278930 GST