Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1984 ATGGCCAATAATTCTCAACCCTCCAGCATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTTGTTCCAATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGCGGGAATGCCTGTCATTCAAGGTCAGCAATTGCAGTATTCTCAACCAATGCAGCAGTTGACTCCAAGACCAATGCAGCCTGGTCATCCTGTTCCTTCATCACAAGCTATACCTATGCAATATATTCAGACAAACCGGCCACTGACATCCATTCCAACACATTCACAGCAAACTGTTCCCCCTTTTAGCAATCATATGCCTGGCTTGGCTGTTTCAGTAGCAGCTCCTCATTCTTCATATTTCACACTATCTTATGGTCAGCAGCAAGATAATGCAAACGCATTGGCTCAATACCAGCATCCACCTCAAATGTTTGCTTCTCCTGCTGGTCAATCTTGGCCATCCTCTGCATCTCAGAGTGTTGCGGCTGTTACATCTGTGCAGTCGGCTGGGGTGCAATCATCTGGTGCTGCATCAACTGATACGGTGACTAATGCTACTAACCAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCTGATGGGAGAAGATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGAGAGCTGATGCATCAACTGTTTGGAAAGAATTCACTTCAGAAGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACGTGGTCAATACCAGAGGAACTTAAGTTGGCTCGTGAGCAGGCACAGAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAATGATACATCCAATGCTGCAGTCTCCTCCACAGCAACACCAACACCAACACCAACAGCAGTTAATGCAGCTAGCTTGAACACTTCCTTGACATCAAATCATTCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACACCAATTGCAGCAACCGATTCTCAACAGTCGGTTTCTGGATTATCTGGGTCCTCTGTTTCTCACTCTATAGTTACCCCAAGCACCACAGGAGTAGAACCAAGCACTGTGGTAACTACGAGTGCTGCACCTACAATAGTTGCAGGAAGCTCTGGACTAGCTGAGAATTCACCTCAACAATCCAAAATGCCACCCCTTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGTAAATGGATCTTCTCTTCAAGATATCGAGGAAGCCAAAAGATCATTGCCTGTGGTTGGAAAAAATAATGTTGTTCCACCTGAAGAGAAAACCAATGACGATGAAACCTTGGTATATGCAAATAAACTGGAAGCAAAACTTGCATTTAAAGCTCTTTTGGAATCTGTGAATGTTCAGTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGTATTTGGGTCAAAGGAAGAAGCTGGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCCCGTGAAGAATTCACAAAAATGTTGGAAGAGTGCAAGGAACTTACATCATCCATGAGGTGGAGCAAAGCTATTAGTATGTTTGAAAATGATGAACGATTCAATGCTGTTGAAAGACTAAGGGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAAAAGGAAAATGCTGCAGAGGAACACCGCCGGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGACTATGTGAAGGCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGACTGCTTGCTAGTTTTCCAGGACTATATTCGGGACTTGGAGAAAGAAGAAGAGGAACAAAAAAGAATACAGAAGGATCAAATCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTGCTGGAATTCTTACTGCTAAAACTCAATGGCATGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCTGTTGCGTCAAATACATCTGGTTCCACTCCAAAAGATTTGTTTGAGGATGCTGCAGAGGATCTTGAAAAACAGTATCATGAAGACAAGACGCTCATAAAAGATACAATTAAGTCAGGCAAGATCACTGTAGTGACTACATCAGTATTTGAAGAGTTTAAGGTTGCTGTCTTGGAAGAAGCTGCATGCCAAACAATATCCGAGATCAATTTGAAGCTTATATTCGAAGAGTTGTTAGAGAGAGCCAAGGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACCTGTTATATACATTCAAGGATATTACTGCTTCCTCAAAATGGGAGGATTGCAAGTCTCTTTTTGAGGAGGCTCAAGAGTACAGGTCAATTGGAGACGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCTAAAAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGATAGAGAACGTGAAAAAGATAAGTCTAAGGAACGTCATAGGAAGGATGAAACAGATAGTGATAATCAAGATATGACTGATGGCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGGAAAAGGCATCAGAGCAGTATAGATGATGTGGATTCTGAAAAGGAAGAGAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTCGGAAGCAAGCAGACTCTCCTGAATCAGACAACGAAAACCGGCATAGAAGACACAAGAGGGAGCACTGGGATGGTTCAAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGGGAGCTCGGGGATGATGTTGAGAACTAG 3027 0.4232 MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1984 1008 Gene3D FF domain 505 579 IPR036517 -
Gso17g1984 1008 Gene3D FF domain 580 648 IPR036517 -
Gso17g1984 1008 Gene3D FF domain 649 729 IPR036517 -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 275 351 - -
Gso17g1984 1008 Gene3D - 235 278 - -
Gso17g1984 1008 Gene3D - 191 234 - -
Gso17g1984 1008 SMART ww_5 193 225 IPR001202 GO:0005515
Gso17g1984 1008 SMART ww_5 234 265 IPR001202 GO:0005515
Gso17g1984 1008 ProSiteProfiles FF domain profile. 584 638 IPR002713 -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 854 923 - -
Gso17g1984 1008 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Gso17g1984 1008 ProSitePatterns WW/rsp5/WWP domain signature. 239 263 IPR001202 GO:0005515
Gso17g1984 1008 ProSiteProfiles WW/rsp5/WWP domain profile. 196 225 IPR001202 GO:0005515
Gso17g1984 1008 Gene3D FF domain 786 859 IPR036517 -
Gso17g1984 1008 SUPERFAMILY FF domain 652 726 IPR036517 -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 271 351 - -
Gso17g1984 1008 Coils Coil 773 797 - -
Gso17g1984 1008 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Gso17g1984 1008 CDD WW 239 265 IPR001202 GO:0005515
Gso17g1984 1008 Coils Coil 632 660 - -
Gso17g1984 1008 Coils Coil 565 594 - -
Gso17g1984 1008 SUPERFAMILY FF domain 576 645 IPR036517 -
Gso17g1984 1008 Pfam FF domain 518 568 IPR002713 -
Gso17g1984 1008 Pfam FF domain 451 500 IPR002713 -
Gso17g1984 1008 Pfam FF domain 660 715 IPR002713 -
Gso17g1984 1008 Pfam FF domain 587 624 IPR002713 -
Gso17g1984 1008 Pfam FF domain 796 843 IPR002713 -
Gso17g1984 1008 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 4 1003 - -
Gso17g1984 1008 Coils Coil 844 895 - -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 930 954 - -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 177 201 - -
Gso17g1984 1008 ProSiteProfiles FF domain profile. 516 571 IPR002713 -
Gso17g1984 1008 SUPERFAMILY WW domain 239 270 IPR036020 GO:0005515
Gso17g1984 1008 Gene3D FF domain 449 504 IPR036517 -
Gso17g1984 1008 Coils Coil 497 520 - -
Gso17g1984 1008 ProSiteProfiles FF domain profile. 449 503 IPR002713 -
Gso17g1984 1008 Pfam WW domain 196 223 IPR001202 GO:0005515
Gso17g1984 1008 ProSiteProfiles FF domain profile. 656 719 IPR002713 -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 854 1008 - -
Gso17g1984 1008 SUPERFAMILY FF domain 792 853 IPR036517 -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 177 200 - -
Gso17g1984 1008 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 4 1003 IPR039726 GO:0045292
Gso17g1984 1008 Coils Coil 929 949 - -
Gso17g1984 1008 ProSiteProfiles WW/rsp5/WWP domain profile. 233 265 IPR001202 GO:0005515
Gso17g1984 1008 SMART FF_2 584 638 IPR002713 -
Gso17g1984 1008 SMART FF_2 449 503 IPR002713 -
Gso17g1984 1008 SMART FF_2 791 846 IPR002713 -
Gso17g1984 1008 SMART FF_2 658 719 IPR002713 -
Gso17g1984 1008 SMART FF_2 516 571 IPR002713 -
Gso17g1984 1008 MobiDBLite consensus disorder prediction 961 997 - -
Gso17g1984 1008 CDD WW 196 225 IPR001202 GO:0005515
Gso17g1984 1008 SUPERFAMILY FF domain 510 578 IPR036517 -
Gso17g1984 1008 SUPERFAMILY FF domain 441 503 IPR036517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1984 Gso-Chr17 39165522 39181442 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1984 K12821 - gmx:100819928 1657.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0784 14 8315626 8331689 Gso17g1984 17 39165522 39181442 GST