Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1978 ATGAAGTCCATGAATGATAGTAACACCGTTGATGATGGGAACAATCATAATAACTGGTTGGGATTCTCTCTCTCACCCCACATGAAAATGGATGTTGTTACTTCTTCTACTACCACTGGTCCTCATCATCCCCACCAACACCACCATCATCATCACTACTATCATCACCCTCACGAGGCTTCTGCTGCAGCTTGCAACAACAACAACAACACTGTTCCCACTAACTTCTATATGTCACCCTCACACCTCAACACCTCTGGAATATGTTATGGTGTTGGAGAAAACAGTGCCTTTCACACTCCTTTGGCCATGATGCCTCTCAAGTCAGATGGGTCACTTTGCATTATGGAGGCTCTAACAAGATCACAAACCCAAATGATGGTGCCAACTTCATCTCCAAAACTTGAGGACTTCCTAGGTGGTGCAACTATGGGGGCTCAAGACTATGGAACCCATGAGAGAGAAGCAATGGCTCTAAGCCTAGACAGTATCTACTACAGCAACCAGAATGCTGAACCTGAAACCAACAGGGACCATTCATCTTCTCTTGACCTTCTTTCTGACCATTTCAGGCACCAAACCCATCATCACCCATATTACTCAGGACTTGGGATTTACCAAGTGGAGGAAGAAGAAACCAAGGAACAACCACACGTTGCAGTTTGCAGCTCCCAAATGCCTCAAGTGGTTGAAGGCAGCATTGCTTGCTTCAAAAACTGGGTGCCAACAAGGGAATACTCTTCTTCTTCCACTCAGCAGAATCTGGAGCAGCATCAAGTGAATAGTAGTAGCAGTGGTGGCCTTGGAGAGGATAATAATGTAGCTTATGGGAATGTTGGTGTTGGTAGTAGTGTTGGTTGTGGTGAGTTACAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAATCAAGCTGTGTCACTGTTCCAACTCAGATCTCATCTTCTGGAACTGACTCAGTTGCTGTGGATGCCAAAAAGAGAGGCTCTTCTAAGCTTGGACAGAAGCAACCTGTGCATAGGAAATCCATCGACACATTTGGTCAAAGAACTTCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAAACAAGGAAAGGACGACAAGTGTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACACACATAAACTTCCCGCTAGAAAATTACCAAACTCAACTTGAAGAAATGAAGAATATGAGTAGGCAGGAATACGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGAGTGACAAGGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTCACCAACTTTGACATATCAAGATACGACGTTGAGAGAATAATGGCCAGCAACACCCTTCTAGCTGGAGAGCTAGCTAGAAGAAACAAGAACAGTGAGCCAAGAACCGAGGCCATAGAGTACAATGTTGTGTCAAGCCAACAAGTCATAAGCAACAGGGAAGAAGTTCACGAGACTGTGAACAACAACAACAATAATAATAGTGAAAATGGTTCATCATCAGATTGGAAGATGAGTTTGTATCATCATCAGCAACAGTCAAACAACTGTGACCAGAAAACCATCAAGTGTGAAAATTATAATAGAGGTGGTGCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAAGGCATGATGGATGAGTCTACTAAGATAGGGACTCATTTTTCAAACCCTTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGATAAAATGGGCCCCACTTTGCTCTTTCCAAAGCCTCCAATGGGGTCAAAGATTGTTACTAGCCCTACTGTTGCCAATGGTGTCACTGTTGGCTCTTGGTTTCCCTCTCAAATGAGGCCAGTCTCAATGTCTCACTTGCCAGTTTTTGCTGCTTGGAGTGATGCCTAG 2154 0.4489 MKSMNDSNTVDDGNNHNNWLGFSLSPHMKMDVVTSSTTTGPHHPHQHHHHHHYYHHPHEASAAACNNNNNTVPTNFYMSPSHLNTSGICYGVGENSAFHTPLAMMPLKSDGSLCIMEALTRSQTQMMVPTSSPKLEDFLGGATMGAQDYGTHEREAMALSLDSIYYSNQNAEPETNRDHSSSLDLLSDHFRHQTHHHPYYSGLGIYQVEEEETKEQPHVAVCSSQMPQVVEGSIACFKNWVPTREYSSSSTQQNLEQHQVNSSSSGGLGEDNNVAYGNVGVGSSVGCGELQSLSLSMSPGSQSSCVTVPTQISSSGTDSVAVDAKKRGSSKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTQLEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKNSEPRTEAIEYNVVSSQQVISNREEVHETVNNNNNNNSENGSSSDWKMSLYHHQQQSNNCDQKTIKCENYNRGGAAFSVSLQDLIGIDSVGSSQGMMDESTKIGTHFSNPSSLVTSLSSSREGSPDKMGPTLLFPKPPMGSKIVTSPTVANGVTVGSWFPSQMRPVSMSHLPVFAAWSDA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1978 717 MobiDBLite consensus disorder prediction 641 663 - -
Gso17g1978 717 SMART rav1_2 352 424 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 SMART rav1_2 454 518 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 MobiDBLite consensus disorder prediction 248 271 - -
Gso17g1978 717 Pfam AP2 domain 455 504 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 Pfam AP2 domain 352 410 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 CDD AP2 453 514 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 CDD AP2 351 418 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 PRINTS Ethylene responsive element binding protein signature 353 364 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 PRINTS Ethylene responsive element binding protein signature 494 514 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 15 715 - -
Gso17g1978 717 ProSiteProfiles AP2/ERF domain profile. 352 418 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 715 - -
Gso17g1978 717 ProSiteProfiles AP2/ERF domain profile. 454 512 IPR001471 GO:0003700|GO:0006355
Gso17g1978 717 MobiDBLite consensus disorder prediction 34 55 - -
Gso17g1978 717 SUPERFAMILY DNA-binding domain 453 514 IPR016177 GO:0003677
Gso17g1978 717 MobiDBLite consensus disorder prediction 641 662 - -
Gso17g1978 717 Gene3D AP2/ERF domain 351 420 IPR036955 GO:0003700|GO:0006355
Gso17g1978 717 Gene3D AP2/ERF domain 454 514 IPR036955 GO:0003700|GO:0006355
Gso17g1978 717 SUPERFAMILY DNA-binding domain 351 420 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1978 Gso-Chr17 39062075 39066921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1978 84 539 AP2-EREBP Transcription Factor Family AT4G37750 54.490 2.65e-158 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso17g1978 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1978 K09285 - gmx:100798179 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0790 14 8464449 8469720 Gso17g1978 17 39062075 39066921 GST
Gso17g1978 17 39062075 39066921 Gso4g0416 4 3845877 3850054 PCT
Gso17g1978 17 39062075 39066921 Gso6g0397 6 3679727 3684308 PCT
Gso4g0416 4 3845877 3850054 Gso17g1978 17 39062075 39066921 PCT
Gso6g0397 6 3679727 3684308 Gso17g1978 17 39062075 39066921 PCT