Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1977 ATGGGGGGTCAAGAAAATGCAATGGGGGGGTTTCAACATGGAAATGAGAGCATTCTGACTTGTCCACCAACTTCTGGTCTCAGTGGTCCAAATGTTAATGTTTCAGAAATGGCTATTAGTTCTGTGTCTATGGCCAAGCCTTCAAATGTTGTAGCTAACCCTTTTCTCGCTTCTTCCACTTGGGATCCACTTGTTTCCTTGAGCCAGGCTCAAACTTTTGGAGGCTCTTCAATGGTTTCTCATAATGAGTTTGTCAATGCCAACTCATCTTACCCTCTTGTTTTGGATAACCAGGGGGGGATAAGCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTTGGGGGTATAGTCCCCAAGGTTCATTCCTATGCAAGTGGGGGATTCTCAGAAATGGTTGGTTCTGGCTCTTTTTGCCAACATGGGTCTGGTGATATGGCTGACACAGGGTATCCAACGCATTATAATCCAATCAAGGAGGCTCCAATTATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAGCACCAGGATCTGCACCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCCACCTTCAGTCCAAATAAGAATGCTGAGGGTGATGCTGTGAAAGATTCTCCTGGGAAGGCCTCTGATGGTTCAAAAGAACACGAAAAGAGACCAAAAGTGGAGCAGAATAATGGCGCAGATGTGCGTGGCAAGCAATCAGTGAAGCAAGCTAAAGACAACAATAATTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCACGTGAGAGCTAGAAGAGGTCAAGCCACTAACAGCCACAGCCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTCTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGATATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACCTTCCCCAATGGAAGTTTCCATGGAACATTGGCTGGCATGTCTAGTACATCCTCACAATTCCCTCCTTTGCCACAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1308 0.4411 MGGQENAMGGFQHGNESILTCPPTSGLSGPNVNVSEMAISSVSMAKPSNVVANPFLASSTWDPLVSLSQAQTFGGSSMVSHNEFVNANSSYPLVLDNQGGISNTSHLVQYMSDSNLGGIVPKVHSYASGGFSEMVGSGSFCQHGSGDMADTGYPTHYNPIKEAPIINGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAEGDAVKDSPGKASDGSKEHEKRPKVEQNNGADVRGKQSVKQAKDNNNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGIGAYGPGINSSHTFPNGSFHGTLAGMSSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1977 435 CDD bHLH_AtBPE_like 265 350 - -
Gso17g1977 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 343 IPR036638 GO:0046983
Gso17g1977 435 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 435 - -
Gso17g1977 435 MobiDBLite consensus disorder prediction 171 264 - -
Gso17g1977 435 Gene3D - 272 346 IPR036638 GO:0046983
Gso17g1977 435 MobiDBLite consensus disorder prediction 212 237 - -
Gso17g1977 435 Pfam Helix-loop-helix DNA-binding domain 278 326 IPR011598 GO:0046983
Gso17g1977 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 325 IPR011598 GO:0046983
Gso17g1977 435 SMART finulus 281 331 IPR011598 GO:0046983
Gso17g1977 435 MobiDBLite consensus disorder prediction 239 262 - -
Gso17g1977 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 435 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1977 Gso-Chr17 39042783 39047096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1977 1 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.177 1.20e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1977 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1977 - - gmx:100794464 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0793 14 8528657 8532898 Gso17g1977 17 39042783 39047096 GST