Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1969 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCTAGTCCAAGTACTCCAAGGCCAAATTTCTTGTACTCTTCAGCTAGTGGTGGAAACCATAATCATAATCATCATCAGCATCATAGCCATCACCACCACCATCAGTTTCCAATCAACACCTTTCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGTCACCACACCATTCTGTGAAATCCGAAGCCAGCACTTCTCAGCTTCACGCTCCGATTTTCCACTACCCTTTAATGAGAGGAAATCTTCACAACACTATGCATCATCATCATCCTCAGCAACAACAAGGAGGGAGCCCAACTAGCTCCACTGGTGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCTAATCTTTTAGAAGCCTACATGGATTGTCAAAAGATAGGAGCTACACCCGAAGTGGTGGCGCGTATGGTTGCGGCTAAGCAAGAGTTTGAGGCACGGCAAAGATCTTCAGTTGGTTCAAGGGAAACTTCTAAAGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCTATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTGTCTGATGATAAATGTGAAGGTGCTGGTTCATCAGAAGAGGATCAGGACAACAGTGGAGGAGAAACAGAACTTCCTGAGATTGATCCTCGAGCAGAGGACCGTGAACTCAAAAACCACTTGCTGAGAAAGTACAGTGGTTACTTAAGTAGCCTAAAACAAGAACTCTCCAAGAAGAAAAAGAAAGGGAAACTGCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCCTATCCTTCGGAATCGGAGAAGGTTGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAATTCATGGTGATGGATGGCCTGCATCCGCAGAGTGCAACTCTCTATATGGATGGTCACTACATGGCTGATGGTCACTATCGTCTAGGGCCATGA 1164 0.4373 MEEYTNNNHLSENTGPSPSTPRPNFLYSSASGGNHNHNHHQHHSHHHHHQFPINTFHLQSGGSDHCFQSDQVSPHHSVKSEASTSQLHAPIFHYPLMRGNLHNTMHHHHPQQQQGGSPTSSTGEVEAIKAKIIAHPQYSNLLEAYMDCQKIGATPEVVARMVAAKQEFEARQRSSVGSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRILSDDKCEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1969 387 MobiDBLite consensus disorder prediction 1 35 - -
Gso17g1969 387 ProSitePatterns 'Homeobox' domain signature. 327 350 IPR017970 GO:0000981|GO:0006355
Gso17g1969 387 MobiDBLite consensus disorder prediction 106 123 - -
Gso17g1969 387 Pfam KNOX1 domain 127 169 IPR005540 GO:0003677|GO:0005634
Gso17g1969 387 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Gso17g1969 387 MobiDBLite consensus disorder prediction 62 84 - -
Gso17g1969 387 SMART HOX_1 291 356 IPR001356 GO:0003677
Gso17g1969 387 MobiDBLite consensus disorder prediction 101 123 - -
Gso17g1969 387 SUPERFAMILY Homeodomain-like 290 365 IPR009057 -
Gso17g1969 387 MobiDBLite consensus disorder prediction 36 50 - -
Gso17g1969 387 MobiDBLite consensus disorder prediction 1 50 - -
Gso17g1969 387 Pfam ELK domain 269 290 IPR005539 GO:0003677
Gso17g1969 387 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 379 - -
Gso17g1969 387 CDD homeodomain 301 353 IPR001356 GO:0003677
Gso17g1969 387 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Gso17g1969 387 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Gso17g1969 387 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 379 - -
Gso17g1969 387 SMART KNOX2_2 177 228 IPR005541 GO:0003677|GO:0005634
Gso17g1969 387 MobiDBLite consensus disorder prediction 237 266 - -
Gso17g1969 387 Pfam KNOX2 domain 181 227 IPR005541 GO:0003677|GO:0005634
Gso17g1969 387 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Gso17g1969 387 Gene3D - 294 356 - -
Gso17g1969 387 SMART ELK_2 269 290 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1969 Gso-Chr17 38902787 38908991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1969 63 387 Homeobox Transcription Factor Family AT4G08150 70.659 1.40e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso17g1969 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1969 - - gmx:100800822 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0809 14 8758853 8765547 Gso17g1969 17 38902787 38908991 GST