Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1968 ATGAAGAGGTTCTCTGCCTGCTGCTTCACAAGCAGAATCTCCAAGTTTCACTCCCACTGGAAGCACAACCATTCTCAGTCTCAGATCATGGCAGGAAACATTTCTGGTCCAAGTGGGAGCAAGGGTGCTAATATTTTACTTAATCATGACTTCTCTAGTGGGCTGACCTCTTGGCATCTCAATAGCTGCACTGGCTATGTAATTTCATCCAAATCAGGTACTCAAGGAGGAATCCCAATGGATTTGGATGCTAATTATGCTGTTATCACCGACCGAAAAGAATGCTGGCAAGGTCTTGAGCAAGACATCACCAACAAAATTTCCATTGGTTCCACTTACACGGTTTCGGCTTGTGTGGGAGTTTCCGGGGTTTCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAACATCATGATTCAGCTACTCGTTACTTATTCATTGGAAGAACTTCTGTTAATAATGATAGCTGGGAAAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTGATCGGGTTATAATTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTTATACGATCGGTAGTGATCAACTGTTCCACTCCTAATGATAATACCACAAGCACAGGATGTGTTTCAGCTGGAGATGACAACATCATAGTCAACCCCCAATTTGATGATGGCCTGAAAAACTGGTCTGGAAGAAGCTGCAAGATTATGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAGTCCGGGAAATTCTTCGCATCTGCAACAGAACGCACACAAAGCTGGAATGGAATTCAGCAAGAGATCACTGGACGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTAGAATATTTGGAAACAATGTCTCTACCGCTGATGTACGGGCTACTTTGTGGGTCCAAACGCCAGATCTTCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGATAACAATGCAGGGAAAATTCCTTCTGAATGGTTCTCCATCGAAAGTGGTCCTTTATTTAGAGGGTCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTCTTAAAGCATGCGGCTAAAACACCTCCTTCAACCCCACCAGATGTAAAGAATGTTGCTTTTGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATAGCACAAATGGATGGTTTCCCCTTGGCAATTGTACTTTAAGTGTTAAAACTGGTTCACCACATATAATTCCACCAATGGCACGAGATTCTCTTGGTCCTCATGAGCTCCTAAGCGGGCGCTACATCCTTGTAACTAATCGAATGCAAACATGGATGGGTCCTGCTCAGACCATCACTGATAAAGTGAAACTCTTTGTGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGCTCAGCAGGATCATCAGGGCCTCAGAATGTGAATGTTGCCCTTGGTGTTGACAATCAGTGGGTCAATGGAGGACAAACTCAGGTTTCGGATGACATGTGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTGCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTGGATAGACACACAAGATTTAGATATTTAAAGATCCAAACTGATAAGATTCGTAAACGTGATGTTATCCTGAAATTCTCTGGACTGGACTCTGGCAGCTATGCTAACACCTCGGTAAAAGTTATACAAACACATAATGATTTCCCAATTGGAACATGCATCAGCAGAACGAACATTGACAACGAGGACTTTGTTAACTTCATTGTGAAGCATTTTAACTGGGCTGTGTTTGGAAATGAGTTGAAGTGGTATTGGACGGAGCCACAGCAAGGCAATTTCAATTACAAGGATGCTGATGATATGTTAAGCTTGTGTCAGAAGCACAAGATACAAACTCGCGGCCATTGTATCTTCTGGGAAGTGGACGAAACCGTTCAGCAGTGGATCAAGTCACTGAACAAAAACGATCTGATGACGGCTGTCCAAAACCGCCTAAACGGCCTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTCAACAACGAAATGCTGCACGGTTCATTTTACCAAGATAGGCTAGGCAAGGATATAAGGGCAAACATGTTCAAGACTGCAAGCCAACTAGACCCTTCTGCCACACTCTTTGTGAATGATTATCATGTTGAAGATGGATGCGACACCAGATCATGTCCAGATAAGTACATCCATCACATTCTTGATTTGCAAGAGCAAGGTGCTCCGGTTGGGGGAATTGGAATTCAAGGCCACATAGACTGTCCAATAGGGCCTATTGTTAGTTCTTCCCTGGACAAGTTGGGTATTCTTGGCCTACCTATATGGTTCACCGAGCTTGACGTGTCTTCCGTCAACGAATACGTTAGAGCAGACGATCTCGAAGTTATGCTACGCGAAGCCATGGCTCATCCTACGGTGGAAGGCTTAATGCTGTGGGGATTTTGGGAGCTGTTTATGAGTAGGGACCATTCACATTTGGTCAATGCAGAAGGTGACATCAATGAGGCTGGGAAAAGGTTCTTAGCTCTAAAACAAGAGTGGCTCTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACACCGTCAAAGAAAATTTCAAAGACATTTGTGCTTGACAAAGGTGACTCTCCACTAGTGGTATCCATTGATTTATAA 2796 0.4396 MKRFSACCFTSRISKFHSHWKHNHSQSQIMAGNISGPSGSKGANILLNHDFSSGLTSWHLNSCTGYVISSKSGTQGGIPMDLDANYAVITDRKECWQGLEQDITNKISIGSTYTVSACVGVSGVSQGSSDVLATLKLEHHDSATRYLFIGRTSVNNDSWEKLEGTFSLSTMPDRVIIYLEGPAPGVDLLIRSVVINCSTPNDNTTSTGCVSAGDDNIIVNPQFDDGLKNWSGRSCKIMLHDSMNDGKIVPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQYIGIANVQATDKDWITMQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSTPPDVKNVAFGVNIIENSNLADSTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRMQTWMGPAQTITDKVKLFVTYQVSAWVRIGSAGSSGPQNVNVALGVDNQWVNGGQTQVSDDMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHTRFRYLKIQTDKIRKRDVILKFSGLDSGSYANTSVKVIQTHNDFPIGTCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDMLSLCQKHKIQTRGHCIFWEVDETVQQWIKSLNKNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTASQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDCPIGPIVSSSLDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAMAHPTVEGLMLWGFWELFMSRDHSHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDSPLVVSIDL* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1968 931 PANTHER GLYCOSYL HYDROLASE 205 931 IPR044846 GO:0004553|GO:0005975
Gso17g1968 931 PANTHER GLYCOSYL HYDROLASE 39 206 IPR044846 GO:0004553|GO:0005975
Gso17g1968 931 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 579 874 IPR001000 GO:0004553|GO:0005975
Gso17g1968 931 SMART glyco_10 625 875 IPR001000 GO:0004553|GO:0005975
Gso17g1968 931 SUPERFAMILY Galactose-binding domain-like 42 197 IPR008979 -
Gso17g1968 931 SUPERFAMILY Galactose-binding domain-like 214 368 IPR008979 -
Gso17g1968 931 PRINTS Glycosyl hydrolase family 10 signature 656 668 IPR001000 GO:0004553|GO:0005975
Gso17g1968 931 PRINTS Glycosyl hydrolase family 10 signature 738 749 IPR001000 GO:0004553|GO:0005975
Gso17g1968 931 PRINTS Glycosyl hydrolase family 10 signature 770 782 IPR001000 GO:0004553|GO:0005975
Gso17g1968 931 SUPERFAMILY (Trans)glycosidases 579 882 IPR017853 -
Gso17g1968 931 Gene3D Glycosidases 577 886 - -
Gso17g1968 931 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 205 931 - -
Gso17g1968 931 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 39 206 - -
Gso17g1968 931 Gene3D - 383 543 - -
Gso17g1968 931 Gene3D - 38 196 - -
Gso17g1968 931 Gene3D - 210 368 - -
Gso17g1968 931 SUPERFAMILY Galactose-binding domain-like 385 547 IPR008979 -
Gso17g1968 931 Pfam Glycosyl hydrolase family 10 589 845 IPR001000 GO:0004553|GO:0005975
Gso17g1968 931 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Gso17g1968 931 Pfam Carbohydrate binding domain 387 531 IPR003305 GO:0016798
Gso17g1968 931 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1968 Gso-Chr17 38865677 38871661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1968 1 931 Glycoside Hydrolase AT1G58370 66.316 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1968 - - gmx:100818319 1835.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1968 17 38865677 38871661 Gso4g0427 4 4022936 4026795 PCT
Gso17g1968 17 38865677 38871661 Gso6g0406 6 3797944 3802068 PCT
Gso4g0427 4 4022936 4026795 Gso17g1968 17 38865677 38871661 PCT
Gso6g0406 6 3797944 3802068 Gso17g1968 17 38865677 38871661 PCT