Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1966 ATGTTGAATCATGTGAGCAATAATAATAGCTGCTCATGGCTGTTGTTTGTAGCGAGGCACTACTCTAGAATTCAACCCCCAAGGCCGGTTTCTGTTGAACCAGTAATCAGTGTTTCTAACAATATTGCCCGCCTGGATGCTCCCAAAGAAGGTCCTAAACCCAGACAGCTACTATCATTGCCACCTTTTCCTGGTCACCCCTTGCCCGACAAGAGCTCAATTAGTGGTTCTCGACAGCGTGATTATGTTACTGCTGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCTGTCATTGAATCCCATTTCAGGGAGGGTCTTGTGCAAATGGAGGCTGATGACTCTTCCACTCAGAAAGAAGAGCAGATGAAACCTATGCGAAAGATTAGACCAAATGAAGTGATGAAACGTGGTGCCAGAGTTCATGTGCCTGTGTCAATTTGTGAGACTAGGATTTCCAAAAGATACGATGCTATTCCAAGTGGAACACTATATCCAAATGCCGACGAAATTAAGTATCTGCAGAGGCTGGTGATTTACAAGGACTCAGCTATTATTGTGCTAAATAAACCTCCAAAATTGCCGGTTAAGGGGAGTTTGCCAGTTCATAATAGCATGGATGCTTTGGCAGCTGCGGCACTATCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAGAGAGAGCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGTATCTCATCTCCAATGGTTGTTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGGATTGGAATGAAGCATGTGAAGCTACATATCAGAGGTATTGGGCATTAGTCATAGGGACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTGCTTCTAAATGATGGGAAGACTGAGAGGATAATACTAGCTCACCATTCAAGTGTAGAACCTCGCCAAGAGGCTGTAACTGAGTATAGGGTGCTTGGTCCACAGATAAATGGATGCTCGTGGGTTGAGCTGCGTCCACTTACTTACCGAAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACACCGATAGTGGGTGACTATAAGTATGGCTGGTTTGTGCACAGCCGATGGAAACAAATGCCGCGAGTGGATATCGAGCCAACCACCGGAAAACCATACAAGTTGCGGAGGCCGGAAGGCCTAGATGTTCAGAAGGGAAGTGTTTTATCAAAGGTTCCTCTATTGCATCTTCACTGCAGAGAACTTGTACTCCCCAACATTGTTAAGTTTATGCATGTTTTGAACAATAGTTCAGAAGAACTACGTACTTCACTTAGAGAGCAGCCTGATGTTCTTCGCTTTGTGGCAACAATGCCTTCACATATGAGAATTAGTTGGAATCTTATGTCATCGTATTTAGTCTGA 1431 0.441 MLNHVSNNNSCSWLLFVARHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1966 476 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 11 473 - -
Gso17g1966 476 Pfam RNA pseudouridylate synthase 187 358 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso17g1966 476 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 11 473 - -
Gso17g1966 476 CDD PseudoU_synth_RluA_like 187 383 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso17g1966 476 MobiDBLite consensus disorder prediction 45 76 - -
Gso17g1966 476 Gene3D Pseudouridine synthase 169 435 - -
Gso17g1966 476 SUPERFAMILY Pseudouridine synthase 172 430 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1966 Gso-Chr17 38848706 38861765 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1966 - - gmx:100817786 959.133