Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1963 ATGGCTTCTTCTTCTCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACATCGTGACGGCGGCGTCGCAACTTCCCGTCGAATTTCTGGAACCCTCGCCTCAATCGAAGCTCGTCATCGGCTTTGACTGCGAGGGCGTTGACTTGTGCCGCAAAGGCACTCTCTGCGTAATGCAGCTTGCGTTTCCGGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAGATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATCACCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTCGCAGTTCGTGGTGTCTTGTATTGCCGATGTTTCTGTTTGAACAGTAACAATTTTGCTGATTGGCCATCTCTACCTCCGATTCCAGTAGATAACCTGAATGCTGATGGAAGTGATCCCAAGGAAGAAATTCTTTCAGTTCTTGATATTCCCCAAGGAAAGATGGGACTTGTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCAGTCTTGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTCATCATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATACGGGGTAGAATCTTGGATATATAG 1035 0.4657 MASSSPSHSYLTHLPLHPSHQGDSEKRVEDDESRVPIHIVTAASQLPVEFLEPSPQSKLVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFGVKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYDEKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVRGVLYCRCFCLNSNNFADWPSLPPIPVDNLNADGSDPKEEILSVLDIPQGKMGLVIGKRGATILSIKQSCNAEILTGGPKGPPDKVFIIGPVKEVRKAEAMIRGRILDI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1963 344 CDD KH-I 280 337 - -
Gso17g1963 344 Gene3D - 2 241 IPR036397 GO:0003676
Gso17g1963 344 SUPERFAMILY Ribonuclease H-like 6 233 IPR012337 -
Gso17g1963 344 SMART 35exoneu6 37 226 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso17g1963 344 SMART kh_6 274 342 IPR004087 GO:0003676
Gso17g1963 344 PANTHER - 3 342 - -
Gso17g1963 344 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 273 342 IPR036612 GO:0003723
Gso17g1963 344 CDD Egl_like_exo 50 245 - -
Gso17g1963 344 ProSiteProfiles Type-1 KH domain profile. 275 337 - -
Gso17g1963 344 MobiDBLite consensus disorder prediction 1 31 - -
Gso17g1963 344 Gene3D K Homology domain, type 1 264 342 IPR036612 GO:0003723
Gso17g1963 344 Pfam KH domain 280 338 IPR004088 GO:0003723
Gso17g1963 344 Pfam 3'-5' exonuclease 55 225 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gso17g1963 344 PANTHER EGALITARIAN, ISOFORM B 3 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1963 Gso-Chr17 38814448 38821678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1963 K18740 - gmx:100788577 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0813 14 8871572 8878837 Gso17g1963 17 38814448 38821678 GST