Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0806 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAGCATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGTTGTGGCAAGAGTTGCCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTCTCCGTAGAAGAAGACGACATTATTTGCAGCCTTTACGTCAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAATTGCCAGGAAGAACCGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTGGGGAAGCACCGAAGAGAGCCACGTAATAGAGGGAATTACAACAGTGTTAAGCAAGAAAATGATGTTAATAGAGGGAGTGGTACTACTGATGGTGATTCTTCTTCCTTATCTTTGCTTCAGGAAAATGGTAGCACTACTCATCATCAAGAACAACATCAACAGCAACCATGTTGGCCACAGAATATTAATAACATGCCTGTGCTACCACTACAAGTACCTTTGCCATACAAAAACCAAGGTCCATGTTTTAACGACCAAGATTCCCTCAAAAAACTCCTTATCAAACTCGGAGGAAGATTTTCAGGTGATTCTTACCATCCTACCCTTGATGGCTTGAACCTTGAATTCTCATCACATGGGCAACAAATTTATCAAGAACAAGTCCATGTTGGCTCTTCTGCTGCTTGCATTAGTGCCACTATTAACAACAACAATGAGGTACAATTTGCACAAACTGGTCAATACCCTGGAGTTGATAACTTGGTGCAAGGGCAAGGTGGTAATTTCACTCCGTCGTTTGAGGAAATGGTGTCTTCTTCTAATTATCCAGATGGTTTAGAGTTCTTGTATAATGAGGGCATGATCGACCATAAGATAATAGACACTACTACTACCACAACCTGGGGTGAAACTAGCACTCCAATTTATCATCATCATGATTCACTTGCTTCCACTTACCAAGGTCAAGGTGTGATACAAGAATGTGTTTTGCAAGATTTTAGCTACCCCAGGGCACAATAA 1095 0.4256 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSVEEDDIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQENDVNRGSGTTDGDSSSLSLLQENGSTTHHQEQHQQQPCWPQNINNMPVLPLQVPLPYKNQGPCFNDQDSLKKLLIKLGGRFSGDSYHPTLDGLNLEFSSHGQQIYQEQVHVGSSAACISATINNNNEVQFAQTGQYPGVDNLVQGQGGNFTPSFEEMVSSSNYPDGLEFLYNEGMIDHKIIDTTTTTTWGETSTPIYHHHDSLASTYQGQGVIQECVLQDFSYPRAQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0806 364 SMART sant 67 115 IPR001005 -
Gso14g0806 364 SMART sant 13 64 IPR001005 -
Gso14g0806 364 CDD SANT 16 62 IPR001005 -
Gso14g0806 364 Gene3D - 70 142 - -
Gso14g0806 364 PANTHER OS09G0431300 PROTEIN 1 355 - -
Gso14g0806 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gso14g0806 364 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso14g0806 364 MobiDBLite consensus disorder prediction 116 178 - -
Gso14g0806 364 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso14g0806 364 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso14g0806 364 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso14g0806 364 Gene3D - 7 68 - -
Gso14g0806 364 MobiDBLite consensus disorder prediction 131 178 - -
Gso14g0806 364 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 355 - -
Gso14g0806 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gso14g0806 364 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0806 Gso-Chr14 8673300 8675424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0806 1 213 MYB Transcription Factor Family AT3G49690 61.033 5.43e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso14g0806 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0806 K09422 - gmx:100815092 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0806 14 8673300 8675424 Gso17g1971 17 38960604 38962762 GST
Gso14g0806 14 8673300 8675424 Gso4g0423 4 3963776 3965578 PCT
Gso14g0806 14 8673300 8675424 Gso6g0404 6 3769552 3771514 PCT
Gso4g0423 4 3963776 3965578 Gso14g0806 14 8673300 8675424 PCT
Gso6g0404 6 3769552 3771514 Gso14g0806 14 8673300 8675424 PCT