Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00247 ATGATTGCTGATGTCTCAAAATCAGACAAAATTGTGGTTGAGAAATCCACTGGTCCTGTGAAGACAGAAGAGGCAATTGAGAGAATCTTGACTCACAACAACAAAGGCATCAATTTCACAATTCTTTCAAATCCAGAGTTTCTTGCTAAGGGCACAACAATTGATGACCTATTCAAACCAGATAGGGTTCTCATTTGGGGTAGGGAGACCCCACAAGGGCAAAAGGTGTTGCACTCAATTGGGACAGACTCAAGGGTTGAACCAAGGTGGTGCATCAATGTTCAACACAATTTCAACAAAAAAATTGCAATTCTTGGCTTTGCTTTCAAGAAGGACACTGGTGACACTAGGGAGACTTCAACAATTGATATGTGCAAGGGGCTTTTGGGAGACAAGGCCAAGTTGAGCATATATGACCCTCAAGTCACTGAAGACCAAATCACAAAGGATCTTTCAATGAGGAAGTTTGATAAGGACCACCCTGCACATCTTCAGCCACCAAGCCCTACTTCAATAAAGCTATTGTCTGTGGTTTGGGATGCTTATGATGCACTGAAGGATGCACATGGTGCTTGCATTCTCACCGAGTGGGATGCGTTCAAGAAGCTTGATTAG 615 0.4309 MIADVSKSDKIVVEKSTGPVKTEEAIERILTHNNKGINFTILSNPEFLAKGTTIDDLFKPDRVLIWGRETPQGQKVLHSIGTDSRVEPRWCINVQHNFNKKIAILGFAFKKDTGDTRETSTIDMCKGLLGDKAKLSIYDPQVTEDQITKDLSMRKFDKDHPAHLQPPSPTSIKLLSVVWDAYDALKDAHGACILTEWDAFKKLD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00247 204 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 73 IPR001732 GO:0016616|GO:0051287
Gma20g00247 204 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 98 204 IPR028356 GO:0003979
Gma20g00247 204 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 98 204 - -
Gma20g00247 204 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 103 204 IPR014027 GO:0016616|GO:0051287
Gma20g00247 204 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 80 - -
Gma20g00247 204 Gene3D - 1 78 - -
Gma20g00247 204 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 80 IPR028356 GO:0003979
Gma20g00247 204 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 99 204 IPR036220 -
Gma20g00247 204 SMART UDPG_MGDP_dh_C_a_2_a 103 203 IPR014027 GO:0016616|GO:0051287
Gma20g00247 204 Gene3D - 79 204 - -
Gma20g00247 204 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 78 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00247 Gma-Chr20 2997961 3000603 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00247 K00012 - csin:114310476 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01691 01 52563669 52571431 Gma20g00247 20 2997961 3000603 GST
Gma20g00247 20 2997961 3000603 Gma01g00531 01 7632786 7635482 PCT
Gma20g00247 20 2997961 3000603 Gma02g01052 02 11449474 11451946 PCT
Gma01g00531 01 7632786 7635482 Gma20g00247 20 2997961 3000603 PCT
Gma02g01052 02 11449474 11451946 Gma20g00247 20 2997961 3000603 PCT