Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02468 ATGGATTCCATGGCTCCCCATTGCTTCTCCATACACATTGCTCTCATCTGGGTTCTCCTTTGCCAAGGTGCATTAGGAGCCACGTTTACTCTAATCAACAAGTGTGATTACACTGTGTGGCCCGGGATTTTGGCCAATGCAGGCAGCTCCGGATTGGACTCAACCGGGTTTGAGCTTCGACCCGGTGGGTCACAGAGCTTCCATGCCCCACCCAGTTGGTCCGGAAGATTCTGGGGCCGAACCGGATGCAATTTTGACCCGAACACCCAACAGGGTAGCTGCACCACAGGGGATTGTGGCTCCAACCAAATCCAATGCAACGGCGGCGGGGCAAGCCCACCCGCCACATTGGTGGAGTTCACAATCGGGTCGGGTACCCAGGATTTTTACGATGTGAGTCTCGTTGACGGTTACAATCTGCCTTTAATTGTGGACCCCAATGGCGGTTCGGGTACGTGCGGATCCACCGGGTGCCTTGCGGACCTGAACCAAGGGTGCCCGAATGAGTTACGGGTCGCGGACCGCAGCGCGTGTAGGAGCGCGTGTGAGGCTTTTCAGAGTCCGGAGTATTGTTGCAGCGGCGCGTATGCCTCACCCGCCACATGCAAGCCTTCGGTATACTCGCAGATATTCAAATCCGCGTGTCCCAAATCGTATAGCTACGCATACGACGACGCTACGAGTACGTTTACGTGTACGGGAGCTGATTATACAATTACATTCTGCCCTTCAACCACAAGCCAAAAATCGGCAAGAGATTCACCGGCTCCTCCTCCTCCTTCTGGAATTGGGTCAGAAACAGGGACAGGGGAGATGCCATTGATAGTTAACAGTCCATGGTTTCCCAACTTTTTCACTGGACTATCATCAAAGTCTCACCCTTGCTCCTTGTCATTGATTGCTACTGTGGTCATCGTCGGGTCTTCTTTCCCACAACCCAATGCACCACCGTCACTCCGCGCCCACCTCGGCGCCGGAATCGTGCCCGCTGTTAGGATCAAACAAGAAGAAGGAAATGGACAAAGAGACGGGAGAGGAACGACGCCGCATATGGTAAACAGAAATCACCACAATAGTGTTTTACATTAG 1089 0.5344 MDSMAPHCFSIHIALIWVLLCQGALGATFTLINKCDYTVWPGILANAGSSGLDSTGFELRPGGSQSFHAPPSWSGRFWGRTGCNFDPNTQQGSCTTGDCGSNQIQCNGGGASPPATLVEFTIGSGTQDFYDVSLVDGYNLPLIVDPNGGSGTCGSTGCLADLNQGCPNELRVADRSACRSACEAFQSPEYCCSGAYASPATCKPSVYSQIFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSTTSQKSARDSPAPPPPSGIGSETGTGEMPLIVNSPWFPNFFTGLSSKSHPCSLSLIATVVIVGSSFPQPNAPPSLRAHLGAGIVPAVRIKQEEGNGQRDGRGTTPHMVNRNHHNSVLH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02468 362 ProSiteProfiles Thaumatin family profile. 26 243 IPR001938 -
Gma17g02468 362 PANTHER OS03G0233200 PROTEIN 16 257 IPR001938 -
Gma17g02468 362 MobiDBLite consensus disorder prediction 335 362 - -
Gma17g02468 362 Gene3D Thaumatin 27 243 IPR037176 -
Gma17g02468 362 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Gma17g02468 362 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Gma17g02468 362 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Gma17g02468 362 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Gma17g02468 362 SMART tha2 29 243 IPR001938 -
Gma17g02468 362 SUPERFAMILY Osmotin, thaumatin-like protein 27 244 IPR037176 -
Gma17g02468 362 MobiDBLite consensus disorder prediction 346 362 - -
Gma17g02468 362 PANTHER THAUMATIN-LIKE PROTEIN 1 16 257 - -
Gma17g02468 362 CDD TLP-PA 28 242 - -
Gma17g02468 362 MobiDBLite consensus disorder prediction 246 269 - -
Gma17g02468 362 Pfam Thaumatin family 33 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02468 Gma-Chr17 42718696 42722641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02468 9 250 Receptor kinase-like Gene Family AT5G38280 47.638 6.18e-76 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02468 - - gmx:100786772 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02468 17 42718696 42722641 Gma11g00706 11 5938666 5940744 ECH
Gma17g02468 17 42718696 42722641 Gma01g01693 01 52588415 52590569 ECH
Gma17g02468 17 42718696 42722641 Gma16g01186 16 29435981 29439288 ECH
Gma17g02468 17 42718696 42722641 Gma17g02468 17 42718696 42722641 ECH