Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02467 ATGGATCGCCCAACACTATCATTATTTTCATTCCTACTAACACTCCATCTATCACTATCAGGGGTAATTTCAACCACTTTCACTCTAGTTAACAAATGTGAGTACACGGTGTGGCCGGGAATTCTTTCCAATGCTGGTGTTCCTCCTCTTTCCACCACAGGCTTCGTTCTCCAAACCGGCGCGTCCACTACAATCGCCGCACCCGCGTCTTGGGGTGGCCGTTTCTGGGGCAGAACATTATGCTCCCAGGACTCAACCAGCGGCAAGTTCTCCTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAGTGCTCCGGAAACGGCGCCGCGCCGCCTGCCACCCTGGCCGAGTTCACCCTGGACGGCGCCGGAGGACTCGATTTCTTCGATGTAAGCCTTGTCGACGGCTACAACGTGCCGATGCTGGTGGTGCCGCAGGGTGGCTCCGGCGGGAAGTGCAGCGCGACGGGGTGCGTCGGGGACCTGAACGGCGCGTGTCCCTCAGAGCTGAAGGTGATGAGTGGCGATGGGAGAGAGGGAGTGGTGGCGTGCAAGAGCGCGTGCGAGGCGTTTAACTCGCCGCAGTATTGCTGCAGTGGCGCGTACGGCACGCCCGACACGTGCAAGTCTTCGTCTTACTCCGAGATATTCAAGAGCGCTTGCCCACGCGCCTATAGCTACGCTTACGACGACAAGACCAGCACCTTCACCTGCGCTTCCGCGGATTATACCATCACCTTTTGTCCTTCCCCCACCACCAGTCAGAAGGCATCACAGGGGCAAGATGGTTCTTCTACTACCTCTCCCTTGCTGAACAACAACGGCACAATGGTGTATGAAGGTGCATTTGGTCAGAATGAAATCTCGTGGGCCACGTGCAGCCACGTGTTCCAATCCCAAGCCCTCGCCGGCATTGTCAGTATGACGATGGCTATGTGGCTCTTCTAA 948 0.5759 MDRPTLSLFSFLLTLHLSLSGVISTTFTLVNKCEYTVWPGILSNAGVPPLSTTGFVLQTGASTTIAAPASWGGRFWGRTLCSQDSTSGKFSCVTGDCGSGKLECSGNGAAPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVVPQGGSGGKCSATGCVGDLNGACPSELKVMSGDGREGVVACKSACEAFNSPQYCCSGAYGTPDTCKSSSYSEIFKSACPRAYSYAYDDKTSTFTCASADYTITFCPSPTTSQKASQGQDGSSTTSPLLNNNGTMVYEGAFGQNEISWATCSHVFQSQALAGIVSMTMAMWLF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02467 315 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gma17g02467 315 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gma17g02467 315 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Gma17g02467 315 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Gma17g02467 315 PIRSF PR5 2 285 IPR001938 -
Gma17g02467 315 MobiDBLite consensus disorder prediction 252 272 - -
Gma17g02467 315 PANTHER OS03G0233200 PROTEIN 11 274 IPR001938 -
Gma17g02467 315 SMART tha2 27 249 IPR001938 -
Gma17g02467 315 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Gma17g02467 315 Pfam Thaumatin family 31 249 IPR001938 -
Gma17g02467 315 Gene3D Thaumatin 25 249 IPR037176 -
Gma17g02467 315 PANTHER BNAA02G17480D PROTEIN 11 274 - -
Gma17g02467 315 CDD TLP-PA 26 248 - -
Gma17g02467 315 SUPERFAMILY Osmotin, thaumatin-like protein 25 250 IPR037176 -
Gma17g02467 315 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02467 Gma-Chr17 42703887 42706181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02467 5 254 Receptor kinase-like Gene Family AT5G38280 55.556 1.62e-92 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02467 - - gmx:100785732 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02467 17 42703887 42706181 Gma12g00294 12 2346936 2350185 ECH
Gma17g02467 17 42703887 42706181 Gma17g02467 17 42703887 42706181 ECH