Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02264 ATGGCTTTGGAAGCTCTCAACTCACCAACAACAACCGCTCCATCTTTTCCCTTTGACGACCCAACTATTCCATGGGCGAAACGAAAACGTTCAAAGCGTTCTCGCGACCATCCTTCTGAAGAAGAGTACCTCGCCCTCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCACCGTCAACAACCGCCACGTCAGCCCTCCACCGCCACAGCCACAGCCACAGCCGACACCAGATCCTTCCACCAAGCTCAGTTACAAATGCTCCGTTTGCGACAAGAGCTTCCCCTCTTACCAAGCGCTCGGTGGACACAAGGCCAGTCACCGGAAACTCGCCGCCGCCGCCGAAGACCAACCCCCCAGCACCACCACTTCCTCCGCCGCCGCCACCAGCTCCGCCTCCGGAGGTAAGGCCCATGAGTGCTCCATTTGCCACAAATCCTTCCCCACCGGACAGGCCCTTGGCGGACACAAACGTTGTCACTACGAAGGTAACGGTAACGGAAATAACAACAACAGTAACAGCGTTGTCACCGTCGCCTCGGAAGGCGTGGGGTCCACCCACACTGTCAGTCACGGCCACCACCGCGACTTCGATCTCAACATCCCGGCCTTTCCGGATTTTTCGACCAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTCATGAAGAAGCCTCGCCTCTTCGTCATTCCCAAGATCGAAATCCCCCAATTTCAATGA 723 0.5768 MALEALNSPTTTAPSFPFDDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGTTTVNNRHVSPPPPQPQPQPTPDPSTKLSYKCSVCDKSFPSYQALGGHKASHRKLAAAAEDQPPSTTTSSAAATSSASGGKAHECSICHKSFPTGQALGGHKRCHYEGNGNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTKVGEDEVESPHPVMKKPRLFVIPKIEIPQFQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02264 240 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gma17g02264 240 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 231 IPR044653 GO:0003700
Gma17g02264 240 SMART c2h2final6 85 107 IPR013087 -
Gma17g02264 240 SMART c2h2final6 138 160 IPR013087 -
Gma17g02264 240 SUPERFAMILY beta-beta-alpha zinc fingers 85 160 IPR036236 -
Gma17g02264 240 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Gma17g02264 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Gma17g02264 240 MobiDBLite consensus disorder prediction 64 78 - -
Gma17g02264 240 PANTHER ZINC FINGER PROTEIN ZAT10 1 231 - -
Gma17g02264 240 MobiDBLite consensus disorder prediction 58 84 - -
Gma17g02264 240 Pfam C2H2-type zinc finger 85 109 - -
Gma17g02264 240 Pfam C2H2-type zinc finger 137 161 - -
Gma17g02264 240 MobiDBLite consensus disorder prediction 116 131 - -
Gma17g02264 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
Gma17g02264 240 MobiDBLite consensus disorder prediction 1 17 - -
Gma17g02264 240 MobiDBLite consensus disorder prediction 108 131 - -
Gma17g02264 240 MobiDBLite consensus disorder prediction 1 39 - -
Gma17g02264 240 Gene3D Classic Zinc Finger 83 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02264 Gma-Chr17 40519119 40520278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02264 1 236 C2H2 Transcription Factor Family AT1G27730 51.190 9.62e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma17g02264 zf-C2H2_6 9.3e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02264 17 40519119 40520278 Gma17g02264 17 40519119 40520278 ECH
Gma17g02264 17 40519119 40520278 Gma14g00773 14 7946425 7947160 GST
Gma17g02264 17 40519119 40520278 Gma04g00419 04 3637757 3639928 PCT
Gma17g02264 17 40519119 40520278 Gma06g00408 06 3516597 3517864 PCT
Gma04g00419 04 3637757 3639928 Gma17g02264 17 40519119 40520278 PCT
Gma06g00408 06 3516597 3517864 Gma17g02264 17 40519119 40520278 PCT