Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02245 ATGGCCGAACTCTTCAGGCTCAGTTCCGTCGAGTGGAGCCCTTCGCCGGTCATCGCTTTAGCCACCAGCTTCGACGGCTCGCGTGTCGCCGCCGCCCGCAAAGACGGCTCCCTCGAAATCTGGCTCGTCTCTCCCGGCTCCATCGGCTGGCACTGTCAGCTGACTATACACGGAAACCCTAACGGAAGAGTAACGTCGCTTATTTGGTGCCCCGGCGGCCCCGACGGAAGCCGCTTGTTTTCGTCAAACATAGATGGCTCCGTTACTAAGTGGGATCTTTTCCACTTGACGCAGAAGACGGTGCTGCCATCAGACAGTGTTACAATCTGGCAAATGGCAGTGACTTTCCCTAAGAGTGACGAGATCAATGATAAAAGGAAGGGTGGACAAATGGGGAATGGGTTTCATGATTTTGATGAACATGAGAGCATTGAAAGTGATGAAGATGATGATTCTGGTTCACCTGGTCCTCTCGGGCTATTGGTTGGTGAGCATCCACGCGTGGCAATTGCCCTTGACAATGGATGTGTGAGAATTTGTGATATCTCTGACACAGATGAATTTATTCTTGTAAAATCTTTGCCCCCGGTGAAAGGACGAGTTTTAAGTGTGACTTGGAGTACAGATGCTAACTATATATATTCAGGAAGTAGTGATGGGTTGATACGATGCTGGAATGCTACATTGGGCAATGAAATCTATAGGATTACAGCTGGACTTGGAGGGTTGGGCAATGGACATGAACTTTGTATATGGTCATTACTGTCTTTAAGGTCTGGTACACTTGTTAGTGCGGACAGCAGTGGTAGTGTCCAGTTTTGGGACAGTCAACATGGAACTCTCTTGCAAGCACATTCTTTGCACAAGGGACATGTACATGCTCTGGCAGCATGTCCTAGTCATAATAGGGTGTTCTCTGCTGGTTCTGATGGCCAGGTAATTCTTTACAAGCTATCTAGTAGTCAGTCAACATCATCCAATGATATCAATTCTCCATCAACAATGAAGAGATGGATCTATGTTCACTATGTAAGGGCTCATACACATGACATCAGGGCCCTAGCTGTTGCTGTACCGATAAGTCATGAAGCAGATATTAAGCCAGAAAAGAGGATTAAAAGAGCTCGACGTGCAGAAAATCCCATTAGTTTCCGTTACCATAAGTGGGCTCATTTGGGGGTTCCTATGCTTATCTCAGCAGGAGATGACACAAAACTTTTTGCATACCCAGTGAAAGAATTCACCATGTTTTCTCCTCATGATATCTGTCCTGCGCCTCAGAGAACACCCATTCAACTAGTGCATAATTCTGTCTTTAATCAACGCAAACTGCTTTTAGTCCAATCTTCGCAAAAGATAGAGGTTCAATTGCTACAACTAAAAAATGTCCGCACCTCTGGAGGCTTTACAAAGAACGTTGTAGTGGCTCAAGTTAACAGTAAGGCATCTCAGAAGATAATTTGCAGCACCATTTCTAATTCAGGGGCGCTATTTGCATACTCTGATCATAAAAAGCCTAGTCTTTTTCAATTGAAAAGGGATGAAGTTGGAAAAATCAAGTGGGATGTTAGAAAAAGGGAGCTTCCTCAGATATTACCATTTGCCCATTCTATGATTTTCACTCATGACTCCTCCAAGTTGATAGTAGCAGGTCACGATAAAAGGATATATGTTGTGAATGTTGGGGGGCCAGATGAAGTTAAGTCAGAATTACTGCATACTTTTACACCCCTTCGCAAATCACAAGATCAAGAATTACCTCCGACTGAGCCACCCATAACAAGATTGTTTACTAGTTCTGATGGGCAGTGGTTGGCAGCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGATACTAAGCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCAGGTGGATTTCCTCCCCAGAACGACAATGTACTGATAGTTACAACTTCCTCAAATCAAGTGTATGCTTTTGACGTAGAGGCCAAGCAGTTGGGAGAATGGTCCAAACGGCACACATATGCTCTTCCTAGGAGATACCTGGAATTTCCTGGTGAAGTTATTGGGCTCTCATTCCctccatcagaaacttcatcttctccatcggcaacttcatcttcAGTTGTTGTTTACAGCTCCAGGGCTATGTGCTTGATTGACTTTGGGTTGCCTGTGGAGCAAGATGAAAGTGATATGCTAAATACTAAAGATTCAAGGGCAATGAATTCACAAAATTTTAATgttaagaagaggattgaagttaagaagatgattgaagttaagaagGAACATAATAGGAGGAACTTTGAAGTTATACCTTTCGAGAATCCTGTTTTATGTTTAGGTCATACTTCAAAAAATTCCATCTTTATGGTAGACAAACCATGGTTGCAAGTTGTCAAGAGTTTAGAAGGCCGACCAGTCCACAGACATATATATGGGACATGA 2457 0.4229 MAELFRLSSVEWSPSPVIALATSFDGSRVAAARKDGSLEIWLVSPGSIGWHCQLTIHGNPNGRVTSLIWCPGGPDGSRLFSSNIDGSVTKWDLFHLTQKTVLPSDSVTIWQMAVTFPKSDEINDKRKGGQMGNGFHDFDEHESIESDEDDDSGSPGPLGLLVGEHPRVAIALDNGCVRICDISDTDEFILVKSLPPVKGRVLSVTWSTDANYIYSGSSDGLIRCWNATLGNEIYRITAGLGGLGNGHELCIWSLLSLRSGTLVSADSSGSVQFWDSQHGTLLQAHSLHKGHVHALAACPSHNRVFSAGSDGQVILYKLSSSQSTSSNDINSPSTMKRWIYVHYVRAHTHDIRALAVAVPISHEADIKPEKRIKRARRAENPISFRYHKWAHLGVPMLISAGDDTKLFAYPVKEFTMFSPHDICPAPQRTPIQLVHNSVFNQRKLLLVQSSQKIEVQLLQLKNVRTSGGFTKNVVVAQVNSKASQKIICSTISNSGALFAYSDHKKPSLFQLKRDEVGKIKWDVRKRELPQILPFAHSMIFTHDSSKLIVAGHDKRIYVVNVGGPDEVKSELLHTFTPLRKSQDQELPPTEPPITRLFTSSDGQWLAAVNCFGDIYVFNLEILSQHWFISRLDGASVTAGGFPPQNDNVLIVTTSSNQVYAFDVEAKQLGEWSKRHTYALPRRYLEFPGEVIGLSFPPSETSSSPSATSSSVVVYSSRAMCLIDFGLPVEQDESDMLNTKDSRAMNSQNFNVKKRIEVKKMIEVKKEHNRRNFEVIPFENPVLCLGHTSKNSIFMVDKPWLQVVKSLEGRPVHRHIYGT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02245 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
Gma17g02245 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 226 - -
Gma17g02245 818 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 818 - -
Gma17g02245 818 Gene3D - 6 131 IPR015943 GO:0005515
Gma17g02245 818 SMART WD40_4 237 275 IPR001680 GO:0005515
Gma17g02245 818 SMART WD40_4 187 226 IPR001680 GO:0005515
Gma17g02245 818 SMART WD40_4 49 92 IPR001680 GO:0005515
Gma17g02245 818 SMART WD40_4 525 560 IPR001680 GO:0005515
Gma17g02245 818 SMART WD40_4 579 618 IPR001680 GO:0005515
Gma17g02245 818 SMART WD40_4 3 42 IPR001680 GO:0005515
Gma17g02245 818 SMART WD40_4 278 317 IPR001680 GO:0005515
Gma17g02245 818 MobiDBLite consensus disorder prediction 121 158 - -
Gma17g02245 818 MobiDBLite consensus disorder prediction 121 141 - -
Gma17g02245 818 Gene3D - 436 712 IPR015943 GO:0005515
Gma17g02245 818 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 818 IPR044622 GO:0010073|GO:0035266
Gma17g02245 818 SUPERFAMILY WD40 repeat-like 15 663 IPR036322 GO:0005515
Gma17g02245 818 Gene3D - 137 425 IPR015943 GO:0005515
Gma17g02245 818 Pfam WD domain, G-beta repeat 201 226 IPR001680 GO:0005515
Gma17g02245 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02245 Gma-Chr17 40332849 40339548 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02245 K14548 - gmx:100776641 1566.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02245 17 40332849 40339548 Gma17g02245 17 40332849 40339548 ECH
Gma17g02245 17 40332849 40339548 Gma14g00792 14 8209430 8215609 GST