Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02235 ATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGGCAACCATTTGTTCCAATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGCGGGAATGCCTGTCATTCAAGGTCAGCAATTGCAGTATTCTCAACCAATGCAGCAGTTGACTCCAAGACCAATGCAGCCTGGTCATCCTGTTCCTTCATCACAAGCTATACCTATGCAATATATTCAGACAAACCGGCCACTGACATCCATTCCAACACATTCACAGCAAACTGTTCCCCCTTTTAGCAATCATATGCCTGGCTTGGCTGTTTCAGTAGCAGCTCCTCATTCTTCATATTTCACACTATCTTATGGTCAGCAGCAAGATAATGCAAACGCATTGGCTCAATACCAGCATCCACCTCAAATGTTTGCTTCTCCTGCTGGTCAATCTTGGCCATCCTCTGCATCTCAGAGTGTTGCGGCTGTTACATCTGTGCAGTCGGCTGGGGTGCAATCATCTGGTGCTGCATCAACTGATACGGTGACTAATGCTACTAACCAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCTGATGGGAGAAGATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGAGAGCTGATGCATCAACTGTTTGGAAAGAATTCACTTCAGAAGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACGTGGTCAATACCAGAGGAACTTAAGTTGGCTCGTGAGCAGGCACAGAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAATGATACATCCAATGCTGCAGTCTCCTCCACAGCAACACCAACACCAACACCAACAGCAGTTAATGCAGCTAGCTTGAACACTTCCTTGACATCAAATCATTCAAATGGGCTTGCTTCCAGCCCATCTTCTGTCACACCAATTGCAGCAACCGATTCTCAACAGTCGGTTTCTGGATTATCTGGGTCCTCTGTTTCTCACTCTATAGTTACCCCAAGCACCACAGGAGTAGAACCAAGCACTGTGGTAACTACGAGTGCTGCACCTACAATAGTTGCAGGAAGCTCTGGACTAGCTGAGAATTCACCTCAACAATCCAAAATGCCACCCCTTGTTGAAAATCAAGCATCTCAAGATTTTGCTTCTGTAAATGGATCTTCTCTTCAAGATATCGAGGAAGCCAAAAGATCATTGCCTGTGGTTGGAAAAAATAATGTTGTTCCACCTGAAGAGAAAACCAATGACGATGAAACCTTGGTATATGCAAATAAACTGGAAGCAAAACTTGCATTTAAAGCTCTTTTGGAATCTGTGAATGTTCAGTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGTATTTGGGTCAAAGGAAGAAGCTGGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCCCGTGAAGAATTCACAAAAATGTTGGAAGAGTGCAAGGAACTTACATCATCCATGAGGTGGAGCAAAGCTATTAGTATGTTTGAAAATGATGAACGATTCAATGCTGTTGAAAGACTAAGGGACCGAGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAAAAGGAAAATGCTGCAGAGGAACACCGCCGGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGACTATGTGAAGGCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGACTGCTTGCTAGTTTTCCAGGACTATATTCGGGACTTGGAGAAAGAAGAAGAGGAACAAAAAAGAATACAGAAGGATCAAATCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTGCTGGAATTCTTACTGCTAAAACTCAATGGCATGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCTGTTGCGTCAAATACATCTGGTTCCACTCCAAAAGATTTGTTTGAGGATGCTGCAGAGGATCTTGAAAAACAGTATCATGAAGACAAGACGCTCATAAAAGATACAATTAAGTCAGGCAAGATCACTGTAGTGACTACATCAGTATTTGAAGAGTTTAAGGTTGCTGTCTTGGAAGAAGCTGCATGCCAAACAATATCCGAGATCAATTTGAAGCTTATATTCGAAGAGTTGTTAGAGAGAGCCAAGGAGAAGGAGGAGAAAGAAGCCAAGAAGCGCCAACGCCTTGCTGATGACTTTACTAACCTGTTATATACATTCAAGGATATTACTGCTTCCTCAAAATGGGAGGATTGCAAGTCTCTTTTTGAGGAGGCTCAAGAGTACAGGTCAATTGGAGACGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCTAAAAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGATAGAGAACGTGAAAAAGATAAGTCTAAGGAACGTCATAGGAAGGATGAAACAGATAGTGATAATCAAGATATGACTGATGGCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGGAAAAGGCATCAGAGCAGTATAGATGATGTGGATTCTGAAAAGGAAGAGAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTCGGAAGCAAGCAGACTCTCCTGAATCAGACAACGAAAACCGGCATAGAAGACACAAGAGGGAGCACTGGGATGGTTCAAGGAAAACTGGGGGGCATGAGGAACTTGAAGACGGGGAGCTCGGGGATGATGTTGAGAACTAG 3000 0.4227 MQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02235 999 CDD WW 230 256 IPR001202 GO:0005515
Gma17g02235 999 ProSiteProfiles FF domain profile. 507 562 IPR002713 -
Gma17g02235 999 ProSiteProfiles FF domain profile. 440 494 IPR002713 -
Gma17g02235 999 Pfam FF domain 578 615 IPR002713 -
Gma17g02235 999 Pfam FF domain 442 491 IPR002713 -
Gma17g02235 999 Pfam FF domain 509 559 IPR002713 -
Gma17g02235 999 Pfam FF domain 787 834 IPR002713 -
Gma17g02235 999 Pfam FF domain 651 706 IPR002713 -
Gma17g02235 999 MobiDBLite consensus disorder prediction 262 342 - -
Gma17g02235 999 SUPERFAMILY FF domain 567 636 IPR036517 -
Gma17g02235 999 MobiDBLite consensus disorder prediction 168 192 - -
Gma17g02235 999 SUPERFAMILY FF domain 501 569 IPR036517 -
Gma17g02235 999 SUPERFAMILY WW domain 188 222 IPR036020 GO:0005515
Gma17g02235 999 Coils Coil 920 940 - -
Gma17g02235 999 Gene3D FF domain 571 639 IPR036517 -
Gma17g02235 999 Gene3D FF domain 496 570 IPR036517 -
Gma17g02235 999 Gene3D FF domain 640 720 IPR036517 -
Gma17g02235 999 MobiDBLite consensus disorder prediction 952 988 - -
Gma17g02235 999 ProSiteProfiles WW/rsp5/WWP domain profile. 187 216 IPR001202 GO:0005515
Gma17g02235 999 MobiDBLite consensus disorder prediction 921 945 - -
Gma17g02235 999 MobiDBLite consensus disorder prediction 845 999 - -
Gma17g02235 999 ProSitePatterns WW/rsp5/WWP domain signature. 230 254 IPR001202 GO:0005515
Gma17g02235 999 Coils Coil 488 511 - -
Gma17g02235 999 MobiDBLite consensus disorder prediction 168 191 - -
Gma17g02235 999 Gene3D FF domain 777 850 IPR036517 -
Gma17g02235 999 ProSiteProfiles FF domain profile. 575 629 IPR002713 -
Gma17g02235 999 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 1 994 IPR039726 GO:0045292
Gma17g02235 999 CDD WW 187 216 IPR001202 GO:0005515
Gma17g02235 999 SUPERFAMILY FF domain 643 717 IPR036517 -
Gma17g02235 999 SUPERFAMILY FF domain 783 844 IPR036517 -
Gma17g02235 999 SMART ww_5 225 256 IPR001202 GO:0005515
Gma17g02235 999 SMART ww_5 184 216 IPR001202 GO:0005515
Gma17g02235 999 Gene3D FF domain 440 495 IPR036517 -
Gma17g02235 999 SUPERFAMILY FF domain 432 494 IPR036517 -
Gma17g02235 999 MobiDBLite consensus disorder prediction 845 914 - -
Gma17g02235 999 Coils Coil 623 651 - -
Gma17g02235 999 ProSiteProfiles WW/rsp5/WWP domain profile. 224 256 IPR001202 GO:0005515
Gma17g02235 999 ProSitePatterns WW/rsp5/WWP domain signature. 189 214 IPR001202 GO:0005515
Gma17g02235 999 SMART FF_2 649 710 IPR002713 -
Gma17g02235 999 SMART FF_2 575 629 IPR002713 -
Gma17g02235 999 SMART FF_2 440 494 IPR002713 -
Gma17g02235 999 SMART FF_2 507 562 IPR002713 -
Gma17g02235 999 SMART FF_2 782 837 IPR002713 -
Gma17g02235 999 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 1 994 - -
Gma17g02235 999 Coils Coil 556 585 - -
Gma17g02235 999 Pfam WW domain 187 214 IPR001202 GO:0005515
Gma17g02235 999 Gene3D - 182 225 - -
Gma17g02235 999 Gene3D - 226 269 - -
Gma17g02235 999 ProSiteProfiles FF domain profile. 647 710 IPR002713 -
Gma17g02235 999 Coils Coil 835 886 - -
Gma17g02235 999 MobiDBLite consensus disorder prediction 266 342 - -
Gma17g02235 999 SUPERFAMILY WW domain 230 261 IPR036020 GO:0005515
Gma17g02235 999 Coils Coil 764 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02235 Gma-Chr17 40213293 40227896 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02235 K12821 - gmx:100819928 1640.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02235 17 40213293 40227896 Gma17g02235 17 40213293 40227896 ECH
Gma17g02235 17 40213293 40227896 Gma14g00802 14 8347044 8363151 GST