Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02227 ATGGCGGATCTGTCCGTTCTCGGTTGGATTCTGTGCTCCGCTCTGAGCCTCTTCGCGCTCTACAGCCTGGCCTTCGGCGGAGCGAGCCGTAACCGCGCTTCGCCGGAGAAGAGGAATGAGTTATCGGAGACCGTGACGACCTCCGCCGGAGAATGTAGATCAGAGAAACACCACGGCGACGCTGACGTCATCATTGTCGGAGCCGGCGTCGCCGGCGCCTCTCTGGCGCACACTCTCGGCAAGGATGGGCGTCGGGTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTTCAACCCGGTGGCTATCTCAAATTAATTGAGCTCGGACTTGAAGATTGTGTGGACAAAATTGATGCTCAGCAAGTGTTTGGTTATGCCCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCTTGGAGAAGTTTCACTCGGATGTCTCTGGCAGAAGCTTTCACAATGGGCGCTTTATTCAGAGGTTGCGGGAGAAAGCTGCCTCACTTGCCAAtgtacgattggagcaaggaacagtcacttccctggttgaagagaagggaacaattaaaggtgtgcaatataagaacaaagatggccaggagttgacaacatatgctcctcttaccattgtttgtgatggttgcttctcaaacttacgccgttctctttgtaatcctaaggtggatattccctcatgttttgttggtttagttttagagaactgtgaacttccatgtgcaaatcatggccatgtcatactgggagacccttcgccgattctattctatcctatcagtagtacagagattcgctgtctggtcgatgtacctggtcagaaggttccttctatatcaaacggtgaaatggaaaagtatttgaagacaatggtggctccacagatccccccccagctttatgatgccttcattgctgctgttgacaaaggcaacataaggacaatgccaaacagaagcatgccagcagatcctcatcctacacccggagcccttctgatgggagatgcattcaacatgcgacatccactaactgggggaggaatgactgtagcattgtctgatattgtggtgctgagaaatcttctaagccctttgtctgacctgaatgatgcacccacactctgtaaataccttgaatcattttataccttgcgtaagcctgtggcatccaccataaatacattggcaggtgctctttacaaagtattttgtgcatcccctgatctggcaaggaaggaaatgcgccaagcttgcttcgattatctcagccttggaggcctattctcggaaggaccagtctctttactttctggattaaaccctcgtcccttgagcttggttctccatttctttgctgttgcaatatacggtgttggccgtctattgttaccatttccttcacctaagagagtatggatcggagcccgattaatctcgggtgcatctgcaatcatccttcccataattaaggccgaagggattcgtcagatgtttttccctgccactgttccagcttattacagaactcctccagttgcacaataA 1581 0.1828 MADLSVLGWILCSALSLFALYSLAFGGASRNRASPEKRNELSETVTTSAGECRSEKHHGDADVIIVGAGVAGASLAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRLREKAASLANVRLEQGTVTSLVEEKGTIKGVQYKNKDGQELTTYAPLTIVCDGCFSNLRRSLCNPKVDIPSCFVGLVLENCELPCANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMEKYLKTMVAPQIPPQLYDAFIAAVDKGNIRTMPNRSMPADPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLSPLSDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDLARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRVWIGARLISGASAIILPIIKAEGIRQMFFPATVPAYYRTPPVAQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02227 526 MobiDBLite consensus disorder prediction 29 52 - -
Gma17g02227 526 PANTHER SQUALENE MONOOXYGENASE 1 526 IPR040125 GO:0004506|GO:0016126
Gma17g02227 526 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 526 - -
Gma17g02227 526 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Gma17g02227 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Gma17g02227 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Gma17g02227 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Gma17g02227 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Gma17g02227 526 SUPERFAMILY FAD/NAD(P)-binding domain 61 435 IPR036188 -
Gma17g02227 526 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gma17g02227 526 Gene3D - 54 432 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02227 Gma-Chr17 40052299 40056911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02227 37 523 Miscellaneous Gene Families AT1G58440 78.659 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02227 K00511 - gmx:100795522 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02227 17 40052299 40056911 Gma17g02227 17 40052299 40056911 ECH
Gma17g02227 17 40052299 40056911 Gma14g00818 14 8666386 8671000 GST
Gma17g02227 17 40052299 40056911 Gma04g00446 04 3965273 3968498 PCT
Gma17g02227 17 40052299 40056911 Gma06g00443 06 3795062 3799419 PCT
Gma04g00446 04 3965273 3968498 Gma17g02227 17 40052299 40056911 PCT
Gma06g00443 06 3795062 3799419 Gma17g02227 17 40052299 40056911 PCT