Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02219 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACAGGTCCTAGTCCAAGTACTCCAAGGCCAAATTTCTTGTACTCTTCAGCTAGTGGTGGAAACcataatcataatcatcatcagcatcatagccatcaccaccaccatcaGTTTCCAATCAACACCTTTCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGTCACCACACCATTCTGTGAAATCCGAAGCCAGCACTTCTCAGCTTCACGCTCCGATTTTCCACTACCCTTTAATGAGAGGAAATCTTCACAACACTATGCATCATCATCATCCTCAGCAACAACAAGGAGGGAGCCCAACTAGCTCCACTGGTGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCTAATCTTTTAGAAGCCTACATGGATTGTCAAAAGATAGGAGCTACACCCGAAGTGGTGGCGCGTATGGTTGCGGCTAAGCAAGAGTTTGAGGCACGGCAAAGATCTTCAGTTGGTTCAAGGGAAACTTCTAAAGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCTATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTGTCTGTAGATGATAAATGTGAAGGTGCTGGTTCATCAGAAGAGGATCAGGACAACAGTGGAGGAGAAACAGAACTTCCTGAGATTGATCCTCGAGCAGAGGACCGTGAACTCAAAAACCACTTGCTGAGAAAGTACAGTGGTTACTTAAGTAGCCTAAAACAAGAACTCTCCAAGAAGAAAAAGAAAGGGAAACTGCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCCTATCCTTCGGAATCGGAGAAGGTTGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAATTCATGGTGATGGATGGCCTGCATCCGCAGAGTGCAACTCTCTATATGGATGGTCACTACATGGCTGATGGTCACTATCGTCTAGGGCCATGA 1167 0.4207 MEEYTNNNHLSENTGPSPSTPRPNFLYSSASGGNHNHNHHQHHSHHHHHQFPINTFHLQSGGSDHCFQSDQVSPHHSVKSEASTSQLHAPIFHYPLMRGNLHNTMHHHHPQQQQGGSPTSSTGEVEAIKAKIIAHPQYSNLLEAYMDCQKIGATPEVVARMVAAKQEFEARQRSSVGSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRILSVDDKCEGAGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02219 388 MobiDBLite consensus disorder prediction 1 35 - -
Gma17g02219 388 MobiDBLite consensus disorder prediction 106 123 - -
Gma17g02219 388 Pfam KNOX1 domain 127 169 IPR005540 GO:0003677|GO:0005634
Gma17g02219 388 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Gma17g02219 388 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 380 - -
Gma17g02219 388 ProSiteProfiles 'Homeobox' domain profile. 290 353 IPR001356 GO:0003677
Gma17g02219 388 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 380 - -
Gma17g02219 388 MobiDBLite consensus disorder prediction 62 84 - -
Gma17g02219 388 MobiDBLite consensus disorder prediction 101 123 - -
Gma17g02219 388 SMART ELK_2 270 291 IPR005539 GO:0003677
Gma17g02219 388 ProSitePatterns 'Homeobox' domain signature. 328 351 IPR017970 GO:0000981|GO:0006355
Gma17g02219 388 Pfam ELK domain 270 291 IPR005539 GO:0003677
Gma17g02219 388 MobiDBLite consensus disorder prediction 36 50 - -
Gma17g02219 388 MobiDBLite consensus disorder prediction 1 50 - -
Gma17g02219 388 MobiDBLite consensus disorder prediction 240 267 - -
Gma17g02219 388 Gene3D - 295 357 - -
Gma17g02219 388 SMART KNOX2_2 177 228 IPR005541 GO:0003677|GO:0005634
Gma17g02219 388 Pfam Homeobox KN domain 310 349 IPR008422 GO:0003677|GO:0006355
Gma17g02219 388 SUPERFAMILY Homeodomain-like 291 366 IPR009057 -
Gma17g02219 388 SMART HOX_1 292 357 IPR001356 GO:0003677
Gma17g02219 388 ProSiteProfiles ELK domain profile. 270 290 IPR005539 GO:0003677
Gma17g02219 388 Pfam KNOX2 domain 181 227 IPR005541 GO:0003677|GO:0005634
Gma17g02219 388 CDD homeodomain 302 354 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02219 Gma-Chr17 39946334 39952019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02219 63 388 Homeobox Transcription Factor Family AT4G08150 70.659 2.98e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma17g02219 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02219 - - gmx:100800822 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02219 17 39946334 39952019 Gma17g02219 17 39946334 39952019 ECH
Gma17g02219 17 39946334 39952019 Gma14g00827 14 8804795 8810886 GST