Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02218 ATGAAGAGGTTCTCTGCCTGCTGCTTCACAAGCAGAATCTCCAAGTTTCACTCCCACTGGAAGCACAACCATTCTCAGTCTCAGATCATGGCAGGAAACATTTCTGGTCCAAGTGGGAGCAAGGGTGCTAATATTTTACTTAATCATGACTTCTCTAGTGGGCTGACCTCTTGGCATCTCAATAGCTGCACTGGCTATGTAATTTCATCCAAATCAGGTACTCAAGGAGGAATCCCAATGGATTTGGATGCTAATTATGCTGTTATCACCGACCGAAAAGAATGCTGGCAAGGTCTTGAGCAAGACATCACCAACAAAATTTCCATTGGTTCCACTTACACGGTTTCGGCTTGTGTGGGAGTTTCCGGGGTTTCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAACATCATGATTCAGCTACTCGTTACTTATTCATTGGAAGAACTTCTGTTAATAATGATAGCTGGGAAAAGTTGGAAGGGACATTCTCATTGTCAACTATGCCTGATCGGGTTATAATTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTTATACGATCGGTAGTGATCAACTGTTCCACTCCTAATGATAATACCACAAGCACAGGATGTGTTTCAGCTGGAGATGACAACATCATAGTCAACCCCCAATTTGATGATGGCCTGAAAAACTGGTCTGGAAGAAGCTGCAAGATTATGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCAAAGTCCGGGAAATTCTTCGCATCTGCAACAGAACGCACACAAAGCTGGAATGGAATTCAGCAAGAGATCACTGGACGCGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTAGAATATTTGGAAACAATGTCTCTACCGCTGATGTACGGGCTACTTTGTGGGTCCAAACGCCAGATCTTCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGATAACAATGCAGGGAAAATTCCTTCTGAATGGTTCTCCATCGAAAGTGGTCCTTTATTTAGAGGGTCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTCTTAAAGCATGCGGCTAAAACACCTCCTTCAACCCCACCAGATGTAAAGAATGTTGCTTTTGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATAGCACAAATGGATGGTTTCCCCTTGGCAATTGTACTTTAAGTGTTAAAACTGGTTCACCACATATAATTCCACCAATGGCACGAGATTCTCTTGGTCCTCATGAGCTCCTAAGCGGGCGCTACATCCTTGTAACTAATCGAATGCAAACATGGATGGGTCCTGCTCAGACCATCACTGATAAAGTGAAACTCTTTGTGACTTATCAAGTGTCTGCTTGGGTCCGGATTGGCTCAGCAGGATCATCAGGGCCTCAGAATGTGAATGTTGCCCTTGGTGTTGACAATCAGTGGGTCAATGGAGGACAAACTCAGGTTTCGGATGACATGTGGCATGAAATTGGAGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTGCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTGGATAGACACACAAGATTTAGATATTTAAAGATCCAAACTGATAAGATTCGTAAACGTGATGTTATCCTGAAATTCTCTGGACTGGACTCTGGCAGCTATGCTAACACCTCGGTAAAAGTTATACAAACACATAATGATTTCCCAATTGGAACATGCATCAGCAGAACGAACATTGACAACGAGGACTTTGTTAACTTCATTGTGAAGCATTTTAACTGGGCTGTGTTTGGAAATGAGTTGAAGTGGTATTGGACGGAGCCACAGCAAGGCAATTTCAATTACAAGGATGCTGATGATATGTTAAGCTTGTGTCAGAAGCACAAGATACAAACTCGCGGCCATTGTATCTTCTGGGAAGTGGACGAAACCGTTCAGCAGTGGATCAAGTCACTGAACAAAAACGATCTGATGACGGCTGTCCAAAACCGCCTAAACGGCCTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTCAACAACGAAATGCTGCACGGTTCATTTTACCAAGATAGGCTAGGCAAGGATATAAGGGCAAACATGTTCAAGACTGCAAGCCAACTAGACCCTTCTGCCACACTCTTTGTGAATGATTATCATGTTGAAGATGGATGCGACACCAGATCATGTCCAGATAAGTACATCCATCACATTCTTGATTTGCAAGAGCAAGGTGCTCCGGTTGGGGGAATTGGAATTCAAGGCCACATAGACTGTCCAATAGGGCCTATTGTTAGTTCTTCCCTGGACAAGTTGGGTATTCTTGGCCTACCTATATGGTTCACCGAGCTTGACGTGTCTTCCGTCAACGAATACGTTAGAGCAGACGATCTCGAAGTTATGCTACGCGAAGCCATGGCTCATCCTACGGTGGAAGGCTTAATGCTGTGGGGATTTTGGGAGCTGTTTATGAGTAGGGACCATTCACATTTGGTCAATGCAGAAGGTGACATCAATGAGGCTGGGAAAAGGTTCTTAGCTCTAAAACAAGAGTGGCTCTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTGCAAGTTGTGACACCGTCAAAGAAAATTTCAAAGACATTTGTGCTTGACAAAGGTGACTCTCCACTAGTGGTATCCATTGATTTATAA 2796 0.4396 MKRFSACCFTSRISKFHSHWKHNHSQSQIMAGNISGPSGSKGANILLNHDFSSGLTSWHLNSCTGYVISSKSGTQGGIPMDLDANYAVITDRKECWQGLEQDITNKISIGSTYTVSACVGVSGVSQGSSDVLATLKLEHHDSATRYLFIGRTSVNNDSWEKLEGTFSLSTMPDRVIIYLEGPAPGVDLLIRSVVINCSTPNDNTTSTGCVSAGDDNIIVNPQFDDGLKNWSGRSCKIMLHDSMNDGKIVPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQYIGIANVQATDKDWITMQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKTPPSTPPDVKNVAFGVNIIENSNLADSTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRMQTWMGPAQTITDKVKLFVTYQVSAWVRIGSAGSSGPQNVNVALGVDNQWVNGGQTQVSDDMWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHTRFRYLKIQTDKIRKRDVILKFSGLDSGSYANTSVKVIQTHNDFPIGTCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDMLSLCQKHKIQTRGHCIFWEVDETVQQWIKSLNKNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTASQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHIDCPIGPIVSSSLDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAMAHPTVEGLMLWGFWELFMSRDHSHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDSPLVVSIDL 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02218 931 PANTHER GLYCOSYL HYDROLASE 205 931 IPR044846 GO:0004553|GO:0005975
Gma17g02218 931 PANTHER GLYCOSYL HYDROLASE 39 206 IPR044846 GO:0004553|GO:0005975
Gma17g02218 931 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 579 874 IPR001000 GO:0004553|GO:0005975
Gma17g02218 931 SMART glyco_10 625 875 IPR001000 GO:0004553|GO:0005975
Gma17g02218 931 SUPERFAMILY Galactose-binding domain-like 42 197 IPR008979 -
Gma17g02218 931 SUPERFAMILY Galactose-binding domain-like 214 368 IPR008979 -
Gma17g02218 931 PRINTS Glycosyl hydrolase family 10 signature 656 668 IPR001000 GO:0004553|GO:0005975
Gma17g02218 931 PRINTS Glycosyl hydrolase family 10 signature 738 749 IPR001000 GO:0004553|GO:0005975
Gma17g02218 931 PRINTS Glycosyl hydrolase family 10 signature 770 782 IPR001000 GO:0004553|GO:0005975
Gma17g02218 931 SUPERFAMILY (Trans)glycosidases 579 882 IPR017853 -
Gma17g02218 931 Gene3D Glycosidases 577 886 - -
Gma17g02218 931 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 205 931 - -
Gma17g02218 931 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 39 206 - -
Gma17g02218 931 Gene3D - 383 543 - -
Gma17g02218 931 Gene3D - 38 196 - -
Gma17g02218 931 Gene3D - 210 368 - -
Gma17g02218 931 SUPERFAMILY Galactose-binding domain-like 385 547 IPR008979 -
Gma17g02218 931 Pfam Glycosyl hydrolase family 10 589 845 IPR001000 GO:0004553|GO:0005975
Gma17g02218 931 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Gma17g02218 931 Pfam Carbohydrate binding domain 387 531 IPR003305 GO:0016798
Gma17g02218 931 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02218 Gma-Chr17 39908727 39913471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02218 1 931 Glycoside Hydrolase AT1G58370 66.316 0.0 1318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02218 - - gmx:100818319 1835.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02218 17 39908727 39913471 Gma17g02218 17 39908727 39913471 ECH
Gma17g02218 17 39908727 39913471 Gma04g00456 04 4094048 4097619 PCT
Gma17g02218 17 39908727 39913471 Gma06g00450 06 3875307 3878945 PCT
Gma04g00456 04 4094048 4097619 Gma17g02218 17 39908727 39913471 PCT
Gma06g00450 06 3875307 3878945 Gma17g02218 17 39908727 39913471 PCT