Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02217 ATGGGTTTGACACAGCCACAATCACGCATCGCTGAAACTCGTCATCACACTATTAGACTCACTAGCACTGATCTCCTCCTCCTCCTCCGCCGTGAACGTTGGTGGTCGACGACGGCGTTGCGGTTCATACGTTGTATTCCTGGAGTGATGTTGAATCATGTGAGCAATAATAATAGCTGCTCATGGCTGTTGTTTGTAGCGAGGCACTACTCTAGAATTCAACCCCCAAGGCCGGTTTCTGTTGAACCAGTAATCAGTGTTTCTAACAATATTGCCCGCCTGGATGCTCCCAAAGAAGGTCCTAAACCCAGACAGCTACTATCATTGCCACCTTTTCCTGGTCACCCCTTGCCCGACAAGAGCTCAATTAGTGGTTCTCGACAGCGTGATTATGTTACTGCTGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGGTTCTGTCATTGAATCCCATTTCAGGGAGGGTCTTGTGCAAATGGAGGCTGATGACTCTTCCACTCAGAAAGAAGAGCAGATGAAACCTATGCGAAAGATTAGACCAAATGAAGTGATGAAACGTGGTGCCAGAGTTCATGTGCCTGTGTCAATTTGTGAGACTAGGATTTCCAAAAGATACGATGCTATTCCAAGTGGAACACTATATCCAAATGCCGACGAAATTAAGTATCTGCAGAGGCTGGTGATTTACAAGGCATGCCTTTCAACTAGTGACTCAGCTATTATTGTGCTAAATAAACCTCCAAAATTGCCGGTTAAGGGGAGTTTGCCAGTTCATAATAGCATGGATGCTTTGGCAGCTGCGGCACTATCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACAGAGAGAGCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGTATCTCATCTCCAATGGTTGTTCAGTAACATTAACAATGCAAAATCTTCTTGTAAGGATTGGAATGAAGCATGTGAAGCTACATATCAGAGGTATTGGGCATTAGTCATAGGGACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTGCTTCTAAATGATGGGAAGACTGAGAGGATAATACTAGCTCACCATTCAAGTGTAGAACCTCGCCAAGAGGCTGTAACTGAGTATAGGGTGCTTGGTCCACAGATAAATGGATGCTCGTGGGTTGAGCTGCGTCCACTTACTTACCGAAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACACCGATAGTGGGTGACTATAAGTATGGCTGGTTTGTGCACAGCCGATGGAAACAAATGCCGCGAGTGGATATCGAGCCAACCACCGGAAAACCATACAAGTTGCGGAGGCCGGAAGGCCTAGATGTTCAGAAGGGAAGTGTTTTATCAAAGGTTCCTCTATTGCATCTTCACTGCAGAGAACTTGTACTCCCCAACATTGTTAAGTTTATGCATGTTTTGAACAATAGTTCAGAAGAACTACGTACTTCACTTAGAGAGCAGCCTGATGTTCTTCGCTTTGTGGCAACAATGCCTTCACATATGAGAATTAGTTGGAATCTTATGTCATCGTATTTAGTCTGA 1596 0.4492 MGLTQPQSRIAETRHHTIRLTSTDLLLLLRRERWWSTTALRFIRCIPGVMLNHVSNNNSCSWLLFVARHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKACLSTSDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02217 531 Pfam RNA pseudouridylate synthase 242 413 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma17g02217 531 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 60 528 - -
Gma17g02217 531 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 60 528 - -
Gma17g02217 531 MobiDBLite consensus disorder prediction 94 124 - -
Gma17g02217 531 Gene3D Pseudouridine synthase 231 490 - -
Gma17g02217 531 SUPERFAMILY Pseudouridine synthase 234 485 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma17g02217 531 CDD PseudoU_synth_RluA_like 242 438 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02217 Gma-Chr17 39888526 39903608 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02217 - - gmx:100817786 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02217 17 39888526 39903608 Gma14g00831 14 8886610 8888511 GST