Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02216 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAACGTTAAGAGAGGACCATGGTCTCCAGAAGAAGATGCAACACTCAAAAATTATGTAGAGACTCATGGCACTGGTGGAAATTGGATTGCATTGCCCAAAAaagctggccttagacggtgtggcaagagttgccgtctacggtggctcaattatctgaggccagacatcaaacatggaggctttactgAAGAAGAGGACAACATCATTTGCACCCTCTATGCTCAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGTAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCTAGAAAAGTTACCCTCAAAACATTGACTCACAATGACACTCTTCCTTCAACTTCAACTCCATCATCACTAACCAACAACCAAAATGTCAAGACTAGTCAAAATTCACCTTTCCCTTCACAAAATCAAAATTCCCCACCCTCAGTGCTGCCAGTCTTAGATGCTAATAATGCATTATTCATCACTAATAATGAAAAAAGCATTATTAGTTTTGACCAAACTCATCATGGGTTGTATAGTCCACAAGTCATGGATGATGTTGTGTCACAAATTGGTGCAAGTTCAAGGATTATTAACAATAATAATAATAATAATCCTATGCTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCCTCTTCAATTGCAATGAACAACAACAATGTGTCACATCCAGAACAACAGCATGCTAGTGATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTTTGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAATTTGCTACAAGTTCCTATCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 930 0.3559 MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMARKVTLKTLTHNDTLPSTSTPSSLTNNQNVKTSQNSPFPSQNQNSPPSVLPVLDANNALFITNNEKSIISFDQTHHGLYSPQVMDDVVSQIGASSRIINNNNNNNPMLSLSQEGSSSISDSSSIAMNNNNVSHPEQQHASDESMEMLMDFGFGFPFDFANGPNCHYERVGEFATSSYPEWVDFSYADIKPH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02216 309 CDD SANT 71 113 IPR001005 -
Gma17g02216 309 SMART sant 13 64 IPR001005 -
Gma17g02216 309 SMART sant 67 115 IPR001005 -
Gma17g02216 309 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma17g02216 309 MobiDBLite consensus disorder prediction 228 258 - -
Gma17g02216 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma17g02216 309 CDD SANT 16 62 IPR001005 -
Gma17g02216 309 Gene3D - 7 68 - -
Gma17g02216 309 PANTHER OS09G0431300 PROTEIN 1 255 - -
Gma17g02216 309 PANTHER OS09G0431300 PROTEIN 1 255 - -
Gma17g02216 309 MobiDBLite consensus disorder prediction 128 167 - -
Gma17g02216 309 MobiDBLite consensus disorder prediction 228 255 - -
Gma17g02216 309 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma17g02216 309 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma17g02216 309 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma17g02216 309 Gene3D - 70 153 - -
Gma17g02216 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma17g02216 309 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02216 Gma-Chr17 39884853 39888300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02216 1 121 MYB Transcription Factor Family AT5G65790 80.165 3.23e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma17g02216 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02216 K09422 - gmx:100789985 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02216 17 39884853 39888300 Gma17g02216 17 39884853 39888300 ECH
Gma17g02216 17 39884853 39888300 Gma14g00832 14 8893757 8896404 GST