Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01184 ATGTCTCCGTATCATGGACATTCTTCTCAACGATTCTTCATTTTCCTACTCATCCTCGCTTTCAGAGGGGTGAGAGTTACAGCCACAACATTCACATTCGTGAACAAGTGCGACCACACAGTGTGGCCAGGCGTTCTAGGAAAACCGGACATCGGAACAACCGGTTTCGAGCTCAAGAGAGGAAGCACGCGTAGCTTCGACGCGCCGCCGGGTTGGTCGGGGAGGTTCTGGGGCCGAACCGGCTGCGAATTCGACGACTCCGGCCACGCCACGTGCGCCACCGGCGACTGCGGATCCGGCCAGGTTAACTGCAACGGCGCCGGAGCCACGCCGCCGGCCACCCTCGCCGAGTTCACGCTCGGCGAGGGTGCCCCGGACTACTACGACGTGAGTCTCGTCGACGGCTACAACCTCCCGATGATGGTGGACGCCAGCGGCGGCTCCGGCTCCTGCGCCGCCACTGGGTGCGGCGCCGACCTGAACCGGCGGTGCCCGGAGGAGCTGAGGGTGGACGGCGGCGACGCGTGCCAGAGCGCGTGCCGCGCGTTCGGGAAGCCGGAGTTTTGCTGCAGCGACGCGTTTAATTCACCGGCGGCGTGCGCGCCGTCGATGTACTCGCAGATTTTCAAGGCTGCGTGCCCAAAATCTTATAGCTATGCGTATGATGATGCTACGAGCACTTTTACGTGCACCGCTGCTGATTACACTGTCACATTTTGTCCCTCTTCTTCTCCAAGTTTGAAGTCATTAATGGAATCGGGGCCAGGATCATCGGTGGAGCAAGCAGCAGTAGCTACTACTTCATGGATAGCCAATTTGGCCACAGGGGACTCCACAAGAAGCAGAAGCCAACCATTTTCAGCTTCCAACTCTGCATTTTTTGTGGCTGTCACTTTCATTATTTCCTATTTAGTCTCATAG 921 0.582 MSPYHGHSSQRFFIFLLILAFRGVRVTATTFTFVNKCDHTVWPGVLGKPDIGTTGFELKRGSTRSFDAPPGWSGRFWGRTGCEFDDSGHATCATGDCGSGQVNCNGAGATPPATLAEFTLGEGAPDYYDVSLVDGYNLPMMVDASGGSGSCAATGCGADLNRRCPEELRVDGGDACQSACRAFGKPEFCCSDAFNSPAACAPSMYSQIFKAACPKSYSYAYDDATSTFTCTAADYTVTFCPSSSPSLKSLMESGPGSSVEQAAVATTSWIANLATGDSTRSRSQPFSASNSAFFVAVTFIISYLVS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01184 306 SMART tha2 31 241 IPR001938 -
Gma16g01184 306 Pfam Thaumatin family 35 241 IPR001938 -
Gma16g01184 306 CDD TLP-PA 30 240 - -
Gma16g01184 306 Gene3D Thaumatin 29 241 IPR037176 -
Gma16g01184 306 ProSiteProfiles Thaumatin family profile. 28 241 IPR001938 -
Gma16g01184 306 PANTHER OS03G0233200 PROTEIN 1 265 IPR001938 -
Gma16g01184 306 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 1 265 - -
Gma16g01184 306 SUPERFAMILY Osmotin, thaumatin-like protein 29 242 IPR037176 -
Gma16g01184 306 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Gma16g01184 306 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Gma16g01184 306 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Gma16g01184 306 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Gma16g01184 306 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Gma16g01184 306 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01184 Gma-Chr16 29370996 29373411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01184 13 278 Receptor kinase-like Gene Family AT5G38280 43.728 3.78e-75 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01184 - - gmx:100808342 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01184 16 29370996 29373411 Gma11g00706 11 5938666 5940744 ECH
Gma16g01184 16 29370996 29373411 Gma01g01693 01 52588415 52590569 ECH
Gma16g01184 16 29370996 29373411 Gma16g01186 16 29435981 29439288 ECH
Gma16g01184 16 29370996 29373411 Gma16g01184 16 29370996 29373411 ECH
Gma02g00432 02 4400123 4402594 Gma16g01184 16 29370996 29373411 ECH
Gma12g00295 12 2356356 2359059 Gma16g01184 16 29370996 29373411 ECH
Gma16g01184 16 29370996 29373411 Gma02g00432 02 4400123 4402594 GST
Gma11g00706 11 5938666 5940744 Gma16g01184 16 29370996 29373411 PCT
Gma16g01184 16 29370996 29373411 Gma11g00706 11 5938666 5940744 PCT