Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00295 ATGGGTCTCTTAGCATCCTCATGCTTCATTCTCATTGCTCTCCTACTCCTCACTCCCAAAGGTGTTATGGGTGCCACCTTCACATTCTTTAACAAATGCGACTACACAGTGTGGCCTGGGATTCTCGCAAATGCCGGTAGCCCACCACTCGACAGCACCGGTTTTGAGCTCCCCAAGGACACTTCTCGCGCCTTCCAAGCTCCCACCGGCTGGTCCGGTCGTTTCTGGGGCCGAACCGGTTGCACCTTCGACGGATCCGGCGCCGGCTCATGCCTCACCGGCGACTGCGGCTCCGGCCAAGTCGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCAACCCTGGCGGAGTTCACGCTCGGCACCGGAGGTCAAGACTTCTACGACGTGAGCCTCGTTGATGGCTACAATCTTCCCATGATCGTGGAAGGCACTGGTGGGTCGGGTCTTTGCGCCTCCACGGGTTGTACCTCGGATCTGAACCAGCAATGTCCTGCGGAGCTGAGAGCCTCGGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGTAGCCCTGAGTACTGCTGCAGCGGCGCGTATGGCTCACCCGCCACTTGCAGGCCGTCCATTTACTCGGAGATGTTCAAGGCTGCTTGCCCTAGGTCTTATAGCTACGCATACGATGATGCTACGAGTACGTTTACGTGTTCCGGCGCCGATTATACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCTTCACGAGATACCACTACCAACCCCATGACCTCAACAACAACATCACCAGGGTCAGGGACAGTGACAGGAACCGGAACCGGAACAGGATCCGAAGGGGCAGTGGTATACACGGGTGCGGACAACGGCGTTGCGTATAATACAGTTACGGATTCCGGGTCAAGTTCAGGATCCGGAGGAGAAACAATGCTCGCAGATGGGTCATATTTAGCTGGTTTAGCCATGGGAGACTCCCCTGAAAGAACAGTTTCCATCGCGTTTGTTTACTCTGCTAGCTTTTTGCTTATTCTCTTCCTGCTTTAG 1041 0.5629 MGLLASSCFILIALLLLTPKGVMGATFTFFNKCDYTVWPGILANAGSPPLDSTGFELPKDTSRAFQAPTGWSGRFWGRTGCTFDGSGAGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCASTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCSGADYTVTFCPSSPSQKSSRDTTTNPMTSTTTSPGSGTVTGTGTGTGSEGAVVYTGADNGVAYNTVTDSGSSSGSGGETMLADGSYLAGLAMGDSPERTVSIAFVYSASFLLILFLL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00295 346 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gma12g00295 346 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gma12g00295 346 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Gma12g00295 346 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Gma12g00295 346 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Gma12g00295 346 PANTHER OS03G0233200 PROTEIN 7 265 IPR001938 -
Gma12g00295 346 Gene3D Thaumatin 25 240 IPR037176 -
Gma12g00295 346 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Gma12g00295 346 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Gma12g00295 346 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 7 265 - -
Gma12g00295 346 Pfam Thaumatin family 31 240 IPR001938 -
Gma12g00295 346 MobiDBLite consensus disorder prediction 240 273 - -
Gma12g00295 346 CDD TLP-PA 26 239 - -
Gma12g00295 346 SMART tha2 27 240 IPR001938 -
Gma12g00295 346 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00295 Gma-Chr12 2356356 2359059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00295 2 271 Receptor kinase-like Gene Family AT5G38280 46.429 2.13e-81 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00295 - - gmx:100801173 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00295 12 2356356 2359059 Gma12g00295 12 2356356 2359059 ECH
Gma12g00295 12 2356356 2359059 Gma11g00707 11 5952090 5953890 ECH
Gma12g00295 12 2356356 2359059 Gma01g01691 01 52563669 52571431 ECH
Gma12g00295 12 2356356 2359059 Gma02g00432 02 4400123 4402594 ECH
Gma12g00295 12 2356356 2359059 Gma16g01184 16 29370996 29373411 ECH