Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00294 ATGGGTCGCCTTCTTCTCTTTCTCATTATTCCCAGCCTTGTCGCATTGTCTTTCCTCTCAGAGGTACAATCAGCGTCGTTCAAGATTGTGAACAAGTGCCGCCACACGATATGGCCGGGATTACTCTCCGGTGCCACCTCGCCGCCGCTTCCCACCACCGGATTCACCCTCGAGAGCGGCAAATCGAGGACCATAAAAATTCCAAAGTCTTGGTCGGGTCGGATATGGGCACGGACACTCTGCGGTCAAGACTCTGACGGAAAGTTCTCCTGCGCCACCGCCGATTGCGGCTCCGGGAAAGTAGAGTGCGTCGGCGGAGCCAAACCGCCGGCGACATTGGCGGAGTTCACTCTCAACGGCGCCGACGGTTTGGACTTCTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTCGCCAAGGACGGCATCAGGGGAGGGTGCAGCGCCACCGGTTGCCTCGTCGACCTCAACGGCGGGTGTCCAGCGGAGCTGAGGGTGGCGCGATCAAACGGCAGCCGCGGGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGGGATCCTCGTTTTTGCTGCAGTGAAGCGTACTCGACGCCTGACACGTGTGGCCCTTCTCCTTATTCACTGTTCTTCAAGCACGCTTGTCCACGCGCGTATAGCTACGCGTATGATGACAAGACCAGCACCTACACATGTGCCAACGCTAACTATTTGATCATTTTCTGCCCCTTCCCCTATACCAGCCAAAAACTGTTGGGAGCACGAAAAGATGGGGCACAGCTTCCTCTGGTAAATAAAACTATGATGTACTTATCAAGGCTACAATCAGGTGGTTCCTCACCATCAGGGTAG 864 0.5671 MGRLLLFLIIPSLVALSFLSEVQSASFKIVNKCRHTIWPGLLSGATSPPLPTTGFTLESGKSRTIKIPKSWSGRIWARTLCGQDSDGKFSCATADCGSGKVECVGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKDGIRGGCSATGCLVDLNGGCPAELRVARSNGSRGSVACRSACEAFGDPRFCCSEAYSTPDTCGPSPYSLFFKHACPRAYSYAYDDKTSTYTCANANYLIIFCPFPYTSQKLLGARKDGAQLPLVNKTMMYLSRLQSGGSSPSG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00294 287 Pfam Thaumatin family 31 247 IPR001938 -
Gma12g00294 287 CDD TLP-PA 26 246 - -
Gma12g00294 287 Gene3D Thaumatin 25 247 IPR037176 -
Gma12g00294 287 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 8 258 - -
Gma12g00294 287 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Gma12g00294 287 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Gma12g00294 287 SMART tha2 27 247 IPR001938 -
Gma12g00294 287 PIRSF PR5 1 280 IPR001938 -
Gma12g00294 287 PANTHER OS03G0233200 PROTEIN 8 258 IPR001938 -
Gma12g00294 287 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gma12g00294 287 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gma12g00294 287 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Gma12g00294 287 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Gma12g00294 287 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Gma12g00294 287 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00294 Gma-Chr12 2346936 2350185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00294 5 247 Receptor kinase-like Gene Family AT5G38280 52.439 5.52e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00294 - - gmx:100802252 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00294 12 2346936 2350185 Gma12g00294 12 2346936 2350185 ECH
Gma04g00224 04 1914820 1918644 Gma12g00294 12 2346936 2350185 ECH
Gma06g00206 06 1818481 1822799 Gma12g00294 12 2346936 2350185 ECH
Gma16g01186 16 29435981 29439288 Gma12g00294 12 2346936 2350185 ECH
Gma17g02467 17 42703887 42706181 Gma12g00294 12 2346936 2350185 ECH
Gma12g00294 12 2346936 2350185 Gma11g00706 11 5938666 5940744 ECH
Gma12g00294 12 2346936 2350185 Gma01g01693 01 52588415 52590569 ECH
Gma12g00294 12 2346936 2350185 Gma16g01186 16 29435981 29439288 ECH
Gma12g00294 12 2346936 2350185 Gma11g00966 11 8200145 8203297 GST