Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00450 ATGGAAAACTTGCAGAAGATCAATGCAGAAAACCACTCCGAGAAGACAACAAGCAAGGGATGTGTTTCCAGTGAAGATGAAAGCATCATAATAAACCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCTATGGGAGATGGGAAAATTCTTCCGAAGACTGGTAAAGTATTTGCATCTGCAACAGAACGTACACAAAGCTGGAACGGAATTCAGCAGGAGATCACTGGAAGAGTGCAGCGGAAGCTTGCCTACGAGGTTACGGCTGTAGTTCGGATATTCGGGAACAATGTCACAACTTCTGATGTTAGGGCTACTTTGTATGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGAATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTCTCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCGCTCCAGGCACTGACATTCTTGTCAATACTTTTGTTATAAAACATGCAGATAAAACACCACCTTCAACTCCCCCGGATTGTGAGGGTGCTGCGTTTGGTGTTAATATAATTGAAAACAGTAATCTGGCCAATGGCACCAATGGGTGGTTTCCACTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTATCATTCCACCAATGGCAAGAGACTCTCTTGGACCTCATGAATCTTTAAGTGGGCGTTACGTCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTTTAACTTATCAAGTATCTGCTTGGGTCCGAATTGGTAATGGATCAAGTGGGCCTCAAAATGTGAATGTTGCCCTTAGTGTTGACAACCAGTGGGTCAACGGAGGACAAGTTGAGGTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGACTTAATGCTTGCTGGACTTCAAATTTTTGCTGTTGATAGACATGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATCCGTAAGCGGGAGATCATCCTAAAATTCTCTGGTCTGGATTCAATTGGAAATCTTGGAACCCTGGTGAGAGTTAAACAAGTACAAAACGATTTCCCCATTGGATCGTGCATTAGTAGAAGCAACATTGACAACGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTCGGGAATGAGCTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCCGATGAAATGTTAGACTTATGTCAGAAGAACAAGATAGACACTCGGGGTCATTGCATCTTCTGGGATGTGGACAACACCGTTCAACAATGGATCAAATCACTGAATAAAACTGATTTGATGACAGCTGTCCAAAACCGCTTAAATGGCTTATTAACTCGCTACAAGGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGATAGACTAGGCAAAGATATAAGGGCAAACATGTTCAAGACCGCACACCAAATAGATCCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACAAGATCATCACCAGAAAAGTACATTCAACACATTCTTGATTTGAAAGAGCAAGGTGCCCCAGTTAGTGGAATAGGAATTCAAGGTCACATAGATAGCCCTGTGGGGCCCATTGTTTGTTCTGCCCTTGATAAAATGGGAACTCTTGGCATACCAATATGGTTCACTGAGCTTGATGTGTCTTCCACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTGCGGGAATCTTTGGCACACCCTGCTATAGATGGTGTTATGCTCTGGGGATTTTGGGAGTTGTTTATGAGTAGGGAAAATTCACACTTGGTGAATGCAGAAGGGGAACTCAACGAAGCTGGGAAAAGATACCTTGCTCTTAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTTGAAGTTGTGACCTTAGCAAAGAAAGTTACCAAGACATTCGTTGTTGACAAGGGTGACTCATCTCTCGTGGTATCAATCGATTTATAA 2229 0.4217 MENLQKINAENHSEKTTSKGCVSSEDESIIINPQFDDGLNNWSGRGCKIALHDSMGDGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNVTTSDVRATLYVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPAPGTDILVNTFVIKHADKTPPSTPPDCEGAAFGVNIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGRYVLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGNGSSGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMLAGLQIFAVDRHARFKYLRRQTDKIRKREIILKFSGLDSIGNLGTLVRVKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDNTVQQWIKSLNKTDLMTAVQNRLNGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQIDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLKEQGAPVSGIGIQGHIDSPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLRESLAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYNVEVVTLAKKVTKTFVVDKGDSSLVVSIDL 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00450 742 Gene3D Glycosidases 390 696 - -
Gma06g00450 742 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 390 685 IPR001000 GO:0004553|GO:0005975
Gma06g00450 742 SUPERFAMILY (Trans)glycosidases 393 693 IPR017853 -
Gma06g00450 742 SMART glyco_10 436 686 IPR001000 GO:0004553|GO:0005975
Gma06g00450 742 Pfam Carbohydrate binding domain 199 342 IPR003305 GO:0016798
Gma06g00450 742 Pfam Carbohydrate binding domain 28 166 IPR003305 GO:0016798
Gma06g00450 742 SUPERFAMILY Galactose-binding domain-like 26 182 IPR008979 -
Gma06g00450 742 Coils Coil 668 688 - -
Gma06g00450 742 PANTHER GLYCOSYL HYDROLASE 16 742 IPR044846 GO:0004553|GO:0005975
Gma06g00450 742 SUPERFAMILY Galactose-binding domain-like 197 357 IPR008979 -
Gma06g00450 742 Pfam Glycosyl hydrolase family 10 399 656 IPR001000 GO:0004553|GO:0005975
Gma06g00450 742 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 613 623 IPR031158 -
Gma06g00450 742 Gene3D - 194 355 - -
Gma06g00450 742 Gene3D - 22 180 - -
Gma06g00450 742 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 16 742 - -
Gma06g00450 742 MobiDBLite consensus disorder prediction 1 22 - -
Gma06g00450 742 PRINTS Glycosyl hydrolase family 10 signature 467 479 IPR001000 GO:0004553|GO:0005975
Gma06g00450 742 PRINTS Glycosyl hydrolase family 10 signature 549 560 IPR001000 GO:0004553|GO:0005975
Gma06g00450 742 PRINTS Glycosyl hydrolase family 10 signature 581 593 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00450 Gma-Chr6 3875307 3878945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00450 4 742 Glycoside Hydrolase AT1G58370 72.470 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00450 - - gmx:100784250 1518.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00450 06 3875307 3878945 Gma06g00450 06 3875307 3878945 ECH
Gma04g00456 04 4094048 4097619 Gma06g00450 06 3875307 3878945 GST
Gma17g02218 17 39908727 39913471 Gma06g00450 06 3875307 3878945 PCT
Gma06g00450 06 3875307 3878945 Gma17g02218 17 39908727 39913471 PCT