Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00448 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCAGAAGAAGATACCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGAAACTGGATCGCTTTGCCACAAAAGATTGGCCTTAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAGACACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCGGGAAGAACTGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAACACCGTAAGGAACTACAGGCACGCAACAAAGGAAACGGTGGTATCCTTAAACAGGAGAACAGTTCCTCGCTCTTGCTTCAGCAAAACAGTGCTCAACAATTACATCCATGTTGGCCACAGATTCCAGTGCTGCCACTTTCATCACCGTACACAAACCAAAGTCCAAGTTTCAACGACCAAGATTCCATTAGAAAGCTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATCCTAGATGGGTTGAATCTTCAGTTCCCACATGGTTCAAATTCTCTCTCATCAACACAACAAATTCAAGAGGAGCAAGTCCATGTTGGTTCTTCTGCACTAGGGTGCATGAACTCTATTGGCCACAATCAAGTACAATTTGGTCAGAGTAATGAGTACTGTGCTGAGTTGGTGCAAGGACAAGGGAGTTTCATTACCACAGCAATTGGGGAAATGGTTTCTTCTAATGATTATTCTCGAAGGTTATTAGGTGGGTCGTTGGAGTTCTTCTATGGGGAGGAAATGATTACTGATAATAAGATAATGGGTGCTTGTGCTTCTTCAAGTTGTGGGCAAAGTACTAATTGGGGTGAAACCAGTAGTTCTCTGATGTATCCTTCTCTTGTTGCTTCGAATTACGAGGGTGTGCGGCAAGAGATGCCACGAGAATGTGCTTTTCAAGAGTTGAGCTACCCGGGGGCGCAATAG 1068 0.456 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGGILKQENSSSLLLQQNSAQQLHPCWPQIPVLPLSSPYTNQSPSFNDQDSIRKLLIKLGGRFSDDYQPILDGLNLQFPHGSNSLSSTQQIQEEQVHVGSSALGCMNSIGHNQVQFGQSNEYCAELVQGQGSFITTAIGEMVSSNDYSRRLLGGSLEFFYGEEMITDNKIMGACASSSCGQSTNWGETSSSLMYPSLVASNYEGVRQEMPRECAFQELSYPGAQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00448 355 PANTHER OS09G0431300 PROTEIN 1 344 - -
Gma06g00448 355 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 344 - -
Gma06g00448 355 CDD SANT 71 113 IPR001005 -
Gma06g00448 355 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma06g00448 355 Gene3D - 7 68 - -
Gma06g00448 355 SMART sant 13 64 IPR001005 -
Gma06g00448 355 SMART sant 67 115 IPR001005 -
Gma06g00448 355 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma06g00448 355 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma06g00448 355 CDD SANT 16 62 IPR001005 -
Gma06g00448 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma06g00448 355 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma06g00448 355 Gene3D - 70 153 - -
Gma06g00448 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma06g00448 355 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00448 Gma-Chr6 3844448 3846358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00448 1 325 MYB Transcription Factor Family AT3G49690 47.941 8.60e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma06g00448 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00448 K09422 - gmx:778079 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00448 06 3844448 3846358 Gma06g00448 06 3844448 3846358 ECH
Gma04g00450 04 4028883 4030752 Gma06g00448 06 3844448 3846358 GST
Gma17g02223 17 40004918 40006893 Gma06g00448 06 3844448 3846358 PCT
Gma14g00823 14 8717694 8719353 Gma06g00448 06 3844448 3846358 PCT
Gma06g00448 06 3844448 3846358 Gma17g02223 17 40004918 40006893 PCT
Gma06g00448 06 3844448 3846358 Gma14g00823 14 8717694 8719353 PCT