Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00443 atggtggaCCCCTACGTGCTCGGATGGATCATATGCGCCGTGCTCAGCCTCGTCGCGCTTCGCAATTTCGCTTTCGCGCGGAAGAACCGTTGCCATTCGTCTGAGACCGATGCCACTCGCCGCGCGGAAAATGTCACCACCGCCGCCGGAGAATGCAGATCCTCGAGTCGCGACGGCGACGTTGACGTCATTATTGTCGGAGCTGGTGTCGCCGGCTCCGCTCTCGCTCACACTCTCGGCAAGGATGGGCGTCGGGTACTTGTCATTGAAAGAGATTTGAGTGAACAAGACCGAATTGTTGGGGAGTTGCTACAACCTGGAGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAACTAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAGCACACAAGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATGTTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTTCCAAtgtacgactggagcaaggaacagtcacttccctacttgaagagaagggggttattaaaggtgtgcactacaaaacgaaggatagtcaagaattatcagcttgtgcaccccttaccgttgtttgtgatggctgtttctcaaacttgcgccgatctctttgtaatcctaaggtagatgttccctctcatttcgttggcttaattttggagagttgtgaacttccttatgctaatcatggccatgtcatactgggagatccttcgccagttctgttctatcggataagtagttcagaaattcgttgtctggttgatgttcctggtcagaaggttccatctatttcgaatggtgaaatgacaaattatttgaagacagtggtagctccacagattccacctgagcttcatgactcattcgtagctgcagtggacaaaggcaacatcaggacaatgccaaacagaagcatgccagcagctccttatcctacgcccggagccctgttgatgggagatgcattcaacatgcgccatcctctaaccgggggtggaatgactgtggcattatctgacatagtagtgctgcgaaatcttctgagacctttgcgtgacctgaatgatgcacctggcctttgcaaatacctagaatccttttataccttacgcaagcctgtggcatccactataaatacgttggcaggagcactttacaaggttttttgcgcatcacctgatccagcaaggaaggaaatgcgccaagcttgcttcgattatcttagtcttggaggtctattctcggaagggccagtctctttgctttcaggattaaaccctcggcccttgagcctggttctccatttctttgctgttgcaatatatggtgttggccgtttactgctaccatttccttcacctaaacggatgtggattggagtccgattaatttctagtgcatctggaatcatcttgccaataattaaggcagaaggagtccgtcagatgttcttccctgcaactgttccagcttactatagaaatcccccggcccaataa 1578 0.173 MVDPYVLGWIICAVLSLVALRNFAFARKNRCHSSETDATRRAENVTTAAGECRSSSRDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEQDRIVGELLQPGGYLKLIELGLEDCVEKIDAQLVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLSNVRLEQGTVTSLLEEKGVIKGVHYKTKDSQELSACAPLTVVCDGCFSNLRRSLCNPKVDVPSHFVGLILESCELPYANHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKVPSISNGEMTNYLKTVVAPQIPPELHDSFVAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPGLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGVRLISSASGIILPIIKAEGVRQMFFPATVPAYYRNPPAQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00443 525 Gene3D - 54 430 IPR036188 -
Gma06g00443 525 PANTHER SQUALENE MONOOXYGENASE 1 525 IPR040125 GO:0004506|GO:0016126
Gma06g00443 525 SUPERFAMILY FAD/NAD(P)-binding domain 60 436 IPR036188 -
Gma06g00443 525 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gma06g00443 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Gma06g00443 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Gma06g00443 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Gma06g00443 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Gma06g00443 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Gma06g00443 525 MobiDBLite consensus disorder prediction 36 55 - -
Gma06g00443 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00443 Gma-Chr6 3795062 3799419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00443 43 523 Miscellaneous Gene Families AT1G58440 78.675 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00443 K00511 - gmx:100820031 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00443 06 3795062 3799419 Gma06g00443 06 3795062 3799419 ECH
Gma04g00446 04 3965273 3968498 Gma06g00443 06 3795062 3799419 GST
Gma17g02227 17 40052299 40056911 Gma06g00443 06 3795062 3799419 PCT
Gma14g00818 14 8666386 8671000 Gma06g00443 06 3795062 3799419 PCT
Gma06g00443 06 3795062 3799419 Gma17g02227 17 40052299 40056911 PCT
Gma06g00443 06 3795062 3799419 Gma14g00818 14 8666386 8671000 PCT