Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00408 ATGGCTTTGGAAGCTCTTCAATCACCCACCACAGCCACTCCATCGTTTAGTCCCTTTGAAGAAACCAGTCTCAGTTACTTAGAGACACCGTGGACGAAAGGAAAGCGTTCTAAGCGTAGCCGCACGGAGCAACAACTGCAACACCCTTCATGCACCGAGGAAGAGTACCTCGCTCTTTGTCTCATCATGCTCGCTCGCGGCGGCGCCGGCAGTGTCTCCACCGCCAAACCCGCTGTCTCCGACAACAATTCTGCGCCGCTATCCGCCGCCAAACTGAGCTACAAATGTTCGGTTTGCAACAAAGCCTTCTCCTCTTACCAAGCACTCGGAGGACACAAGGCCAGCCACCGGAAGCTCGCCGGAGAAAACCACCCGACCTCCTCCGCCGTGACGACGAGTTCGGCGTCGAACGGTGGTGGTAGGACCCACGAGTGCTCCATCTGCCACAAGACGTTTTCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGTAACAGCGCCGTAACCGCCTCTGAGGGAGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGACTTCTCAGCAAGGTTCTTCGTCGATGACGAGGTTACCAGTCCTCATCCATCCAAGAAGTCCCGTTTCAATTTGACCATACCCAAGATTGAAATCCCTCAATACTGA 702 0.5556 MALEALQSPTTATPSFSPFEETSLSYLETPWTKGKRSKRSRTEQQLQHPSCTEEEYLALCLIMLARGGAGSVSTAKPAVSDNNSAPLSAAKLSYKCSVCNKAFSSYQALGGHKASHRKLAGENHPTSSAVTTSSASNGGGRTHECSICHKTFSTGQALGGHKRCHYEGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFSARFFVDDEVTSPHPSKKSRFNLTIPKIEIPQY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00408 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Gma06g00408 233 Gene3D Classic Zinc Finger 92 165 - -
Gma06g00408 233 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gma06g00408 233 Pfam C2H2-type zinc finger 143 166 - -
Gma06g00408 233 Pfam C2H2-type zinc finger 94 118 - -
Gma06g00408 233 SUPERFAMILY beta-beta-alpha zinc fingers 94 165 IPR036236 -
Gma06g00408 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Gma06g00408 233 SMART c2h2final6 94 116 IPR013087 -
Gma06g00408 233 SMART c2h2final6 143 165 IPR013087 -
Gma06g00408 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Gma06g00408 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
Gma06g00408 233 MobiDBLite consensus disorder prediction 1 21 - -
Gma06g00408 233 MobiDBLite consensus disorder prediction 118 137 - -
Gma06g00408 233 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Gma06g00408 233 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00408 Gma-Chr6 3516597 3517864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00408 1 225 C2H2 Transcription Factor Family AT1G27730 53.750 1.11e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma06g00408 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00408 - - gmx:100776038 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00408 06 3516597 3517864 Gma06g00408 06 3516597 3517864 ECH
Gma04g00419 04 3637757 3639928 Gma06g00408 06 3516597 3517864 GST
Gma17g02264 17 40519119 40520278 Gma06g00408 06 3516597 3517864 PCT
Gma14g00773 14 7946425 7947160 Gma06g00408 06 3516597 3517864 PCT
Gma06g00408 06 3516597 3517864 Gma17g02264 17 40519119 40520278 PCT
Gma06g00408 06 3516597 3517864 Gma14g00773 14 7946425 7947160 PCT