Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00220 ATGGTGAAGATATGTGGAATTGGAGCAGGGTATGTAGGGGGTCCAACAATGGCTGTGATTGCCCTCAAATGCCCCTCAATTGAAGTGGCTGTGGTTGACATCTCACACTCTCGCATATCAGCTTGGAACAGCAACAAGCTCCCCATTTACGAGCCCGGCCTAGAACAAGTGGTGAATCAGTGCAGAGGAAAGAACCTCCTCTTCAGCACCAATGTTGAAAAACACGTGCATGAAGCAGACATAATCTTTGTCTCAGTGAACACCCCAACAAAAATCAGAGGACTTGGAGCCGGCAAGGCTGCGGACTTGACCTATTGGGAGAGTGCAGCTAGGATGATAGCTGATGTTTCCAGGTGTAACAAAGTTGTTGTTGAGAAATCCACTGTCCCAGTTAGAACAGCTGAGGCAATTGAGAAAATTCTATGCCATAATACTAATAGCAAGGGCATCAAGTATCAAATTTTGTCAAATCCTGAGTTTCTCTCTGAGGGAACAGCTATTCAAGACCTTCTAAACCCTGATAGGGTTCTCATTGGAGGGAACCAATGCCCTGAAGGTTTAGAAGCAATCCAAAAGTTGAAGGCTATATATGCTCATTGGGTGCCTGAAGACAGAATCATAACAACCAATTTGTGGTCAGCAGAACTTTCCAAGTTAGCTGATAATGCCTTTTTGGCACAAAGGATTTCATCTATTAATGCTATGTCAGCCTTATGTGAGGCCACTGGGGCTGAAGTTTCACAAGTTTCTCATGCTCTAAGCAAAAACACCAAAATTGGACCCAAGTTCCTAAATGCTAGTGTTGGTTTTGGTGGCTCTTGCTTTCAAAAGGACATACTCAACTTGGTGTACATATGTGAGAGCAATGGCCTCACTGAAGTGGCTAATTACTGGAAACAAGTGATCAAGGTGAATGACTACCAAAAGAGTCGTTTTGTGAAGCGTGTTGTGACATCGATGTTCAACACGGTTTCGGGTAAGAAGATTGCAATTCTGGGGTTTGCCTTCAAGAAAGACACTAGTGATACTAGGAAGACACCTGCAATTGATGTTTGCAAAGGACTATTGGGGGATAACGCGTGCTTGACCATCTACGATCCATGCGTTACTGAGGAGCAGATTCAAAAGGATTTGTCAATGGATGGTGTTGAATGGGACCAGCAGCCAATGAGTTCTACTATGGTGAAACAAGTTAGTGTTGTTGGAGATGCCTATGAGGCAACTAAAGAAGCTCATGGGATATGCATTCTTACAGAGTGGGATGAGTTCAAGAACATTGATTATCAAAGGGTGTATGACAACATGCACAAACCAGCATTTGTGTTTGATGGTAGAAACATATTGAATGTTGACAAGCTGAGAGAAATTGGATTCATTGTGTACTCAATTGGGAGGCCATTAGAACAATGGCTAAAGAACATGCCCCAACAGGCTTGA 1437 0.4335 MVKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSNKLPIYEPGLEQVVNQCRGKNLLFSTNVEKHVHEADIIFVSVNTPTKIRGLGAGKAADLTYWESAARMIADVSRCNKVVVEKSTVPVRTAEAIEKILCHNTNSKGIKYQILSNPEFLSEGTAIQDLLNPDRVLIGGNQCPEGLEAIQKLKAIYAHWVPEDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGAEVSQVSHALSKNTKIGPKFLNASVGFGGSCFQKDILNLVYICESNGLTEVANYWKQVIKVNDYQKSRFVKRVVTSMFNTVSGKKIAILGFAFKKDTSDTRKTPAIDVCKGLLGDNACLTIYDPCVTEEQIQKDLSMDGVEWDQQPMSSTMVKQVSVVGDAYEATKEAHGICILTEWDEFKNIDYQRVYDNMHKPAFVFDGRNILNVDKLREIGFIVYSIGRPLEQWLKNMPQQA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00220 478 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 446 IPR017476 GO:0016616
Gma05g00220 478 PIRSF UDPglc_GDPman_dh 2 465 IPR017476 GO:0016616
Gma05g00220 478 SMART UDPG_MGDP_dh_C_a_2_a 330 450 IPR014027 GO:0016616|GO:0051287
Gma05g00220 478 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 330 449 IPR014027 GO:0016616|GO:0051287
Gma05g00220 478 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 216 IPR036291 -
Gma05g00220 478 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 311 IPR008927 -
Gma05g00220 478 Gene3D - 1 210 - -
Gma05g00220 478 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Gma05g00220 478 PIRSF UDPglc_DH_euk 1 477 IPR028356 GO:0003979
Gma05g00220 478 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 306 IPR014026 GO:0016616|GO:0051287
Gma05g00220 478 Gene3D - 243 477 - -
Gma05g00220 478 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 476 IPR028356 GO:0003979
Gma05g00220 478 Gene3D - 211 242 - -
Gma05g00220 478 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 317 461 IPR036220 -
Gma05g00220 478 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00220 Gma-Chr5 2023721 2025857 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00220 05 2023721 2025857 Gma17g00727 17 6155182 6156745 ECH
Gma19g00264 19 3574815 3577817 Gma05g00220 05 2023721 2025857 ECH
Gma05g00220 05 2023721 2025857 Gma05g00220 05 2023721 2025857 ECH
Gma17g00727 17 6155182 6156745 Gma05g00220 05 2023721 2025857 GST