Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00456 ATGGAAAACTTGCAGAAGATCAATGCAGGAAACCACTCTGAGACAACAAACAAGGGATGCGTTTCCACTGAAGAAGAAAGCATCATAATAAACCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCTATGGGAGAAGGGAAAATTCTTCCAAAGACTGGTAAAGTCTTTGCATCTGCAACAGAACGTACGCAAAGCTGGAACGGTATTCAGCAGGAGATCACCGGAAGAGTGCAGCGCAAGCTTGCCTACGAGGTTACTGCTGTAGTTCGGATATTTGGGAACAATATTACAACTTCTGATGTAAGGGCTACTTTGTATGTTCAAGCACCAGATTGTCGGGAGCAGTATATAGGCATTGCCAATGTACAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTTGTAGTTTACTTAGAAGGCCCTCCTCCAGGCGCTGACATTCTTGTCAATACTTTGGTTATAAAACATGCAGATAAAACACCACCTTCAACACCCCCGGATTGTGAGGGTGCTGCTTTTGGTGTTAATATAATTGAAAACAGTAATCTGGCCAATGGCACCAATGGATGGTTTCCTCTGGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTATAATTCCACCAATAGCAAGAGACTCTCTTGGGCCTCATGAATCCTTAAGTGGACGCCACATCCTTGTAACCAATCGTACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTTTTTTTAACTTATCAAGTATCTGCTTGGGTCCGAATTGGTTCTAGATCAACAGGGCCTCAGAATGTGAATGTTGCCCTCAGTGTTGATAACCAGTGGGTCAATGGAGGACAAGTTGAGGTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAACCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTTTAGACTTGATGGTTGCTGGACTTCAGATTTTTGCTGTTGATAGACATGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATCCGTAAGCGGGAAATCATCCTGAAATTCTCTGGGCTGGACTCAATTGGAAATCTTGGAACCTTGGTGAGAGTCAAACAAGTACAAAACGATTTCCCCATTGGATCGTGCATTAGTAGAAGCAACATTGACAACGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTCGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCCGATGAAATGTTAGACTTATGTCAGAAGAACAAGATAGACACCCGGGGTCATTGCATCTTCTGGGATGTGGACGGCACCGTTCAGCAATGGATCAAATCACTGAATAAAAATGATTTGATGACAGCTGTCCAAAACCGCTTAAATGGCTTATTAACTCGCTACATAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTACGTTTTATCAAGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGATTGCACACCAATTAGATCCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACTAGATCATCACCAGAAAAGTACATTCAACATGTTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAAATGGGAACTCTTGGCATACCAATATGGTTCACTGAGCTTGATGTGTCTTCCACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTGCGGGAAGCTTTGGCACACCCTGCTATAGATGGTGTTATGCTATGGGGATTTTGGGAGTTGTTTATGAGCAGGGAAAATTCGCACTTAGTGAATGCAGAAGGGGAACTCAACGAAGCTGGGAAAAGATACCTTGCTCTCAAACAAGAGTGGTTGTCTCATAGCCATGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTTGAAGTTGTGACCTTAGCAAAGAAAGTTACCAAGACCTTCGTTGTTGACAAGGGTGACTCATCACTGGTGGTATCAATCGATTTATAA 2226 0.4223 MENLQKINAGNHSETTNKGCVSTEEESIIINPQFDDGLNNWSGRGCKIALHDSMGEGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNITTSDVRATLYVQAPDCREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGADILVNTLVIKHADKTPPSTPPDCEGAAFGVNIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPIARDSLGPHESLSGRHILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSRSTGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGLDLMVAGLQIFAVDRHARFKYLRRQTDKIRKREIILKFSGLDSIGNLGTLVRVKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDGTVQQWIKSLNKNDLMTAVQNRLNGLLTRYIGKFKHYDVNNEMLHGTFYQDRLGKDIRANMFKIAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQHVLDLQEQGAPVGGIGIQGHIDSPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYNVEVVTLAKKVTKTFVVDKGDSSLVVSIDL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00456 741 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 612 622 IPR031158 -
Gma04g00456 741 SUPERFAMILY Galactose-binding domain-like 26 181 IPR008979 -
Gma04g00456 741 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 15 741 - -
Gma04g00456 741 SUPERFAMILY (Trans)glycosidases 392 692 IPR017853 -
Gma04g00456 741 Pfam Glycosyl hydrolase family 10 398 655 IPR001000 GO:0004553|GO:0005975
Gma04g00456 741 Pfam Carbohydrate binding domain 27 164 IPR003305 GO:0016798
Gma04g00456 741 Pfam Carbohydrate binding domain 198 341 IPR003305 GO:0016798
Gma04g00456 741 PANTHER GLYCOSYL HYDROLASE 15 741 IPR044846 GO:0004553|GO:0005975
Gma04g00456 741 Coils Coil 667 687 - -
Gma04g00456 741 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 389 684 IPR001000 GO:0004553|GO:0005975
Gma04g00456 741 SMART glyco_10 435 685 IPR001000 GO:0004553|GO:0005975
Gma04g00456 741 Gene3D - 193 354 - -
Gma04g00456 741 Gene3D - 21 179 - -
Gma04g00456 741 SUPERFAMILY Galactose-binding domain-like 196 356 IPR008979 -
Gma04g00456 741 Gene3D Glycosidases 389 695 - -
Gma04g00456 741 PRINTS Glycosyl hydrolase family 10 signature 466 478 IPR001000 GO:0004553|GO:0005975
Gma04g00456 741 PRINTS Glycosyl hydrolase family 10 signature 548 559 IPR001000 GO:0004553|GO:0005975
Gma04g00456 741 PRINTS Glycosyl hydrolase family 10 signature 580 592 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00456 Gma-Chr4 4094048 4097619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00456 21 741 Glycoside Hydrolase AT1G58370 73.444 0.0 1153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00456 - - gmx:100801147 1518.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00456 04 4094048 4097619 Gma04g00456 04 4094048 4097619 ECH
Gma04g00456 04 4094048 4097619 Gma06g00450 06 3875307 3878945 GST
Gma17g02218 17 39908727 39913471 Gma04g00456 04 4094048 4097619 PCT
Gma04g00456 04 4094048 4097619 Gma17g02218 17 39908727 39913471 PCT