Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00450 ATGGGGAGGGCACCTTGCTGTGACAAATCAAACGTGAAGAAAGGCCCTTGGTCGCCAGATGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGGAACTGGATTGCTTTGCCACAAAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAATATCAAACACGGTGGTTTCTCTGAAGAAGAAGACAACATCATATGCAGCCTCTACGTTTGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCGCCGTAAGGAACTACAGGCACGAAACAAAGGAAACGGTGTCGTTGAGCACGAGAACAATTCCTCACTCTTGCTTCAGGAAAACAGTGCTCAACAATTACATCCATGTTGGCCACAGATTCCTGCAGTGTTGCCACTTTCACCCTACACAAACCAAAGTCCAAGTTTCAACGACCAAGACTCTATTAGAAAGCTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACGCATCCTTGACGGGTTGAATCTTCAGTTCCCACATGGTTCTCTCTCATCAACACAGCTTCTTCAAGAGGAGCAAGTCCATTTTGTTTCTTCTGCAGGGTGCATGAACTCTATTGGCAACAACCAAGTACAGTTTGGTCAGAGCAATGAGTACCGTGCTGAGTTGGTGCAAGGACAAAGCAGTTTCACTACCACTACAATTGGGGAAATGGTTTCTGCTAATGATTATTCTCAAAGGTTATTAGGTGGGTCGTTGGAGTTCTTCTATGGGGAGGAAATGATTACCGATAAGATAATGGGTGGTGCTTGTGCTTCTTCAAGTTGTGGACAAAGTACTGATTGGGGTGAAACCAGTTCTCTGATTTATCCTCCTCTTGTTGCTTCGAATTACGAGGGTGTGCGTCAAGAGATGCCACGAGAATGTGTTTTTCAAGAGTTAAGCTACCCGGGGGCACAATAG 1053 0.4596 MGRAPCCDKSNVKKGPWSPDEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVCIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKRRKELQARNKGNGVVEHENNSSLLLQENSAQQLHPCWPQIPAVLPLSPYTNQSPSFNDQDSIRKLLIKLGGRFSDDYQRILDGLNLQFPHGSLSSTQLLQEEQVHFVSSAGCMNSIGNNQVQFGQSNEYRAELVQGQSSFTTTTIGEMVSANDYSQRLLGGSLEFFYGEEMITDKIMGGACASSSCGQSTDWGETSSLIYPPLVASNYEGVRQEMPRECVFQELSYPGAQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00450 350 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma04g00450 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gma04g00450 350 CDD SANT 71 111 IPR001005 -
Gma04g00450 350 CDD SANT 16 62 IPR001005 -
Gma04g00450 350 PANTHER OS09G0431300 PROTEIN 1 339 - -
Gma04g00450 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma04g00450 350 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma04g00450 350 Gene3D - 6 68 - -
Gma04g00450 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gma04g00450 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma04g00450 350 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 339 - -
Gma04g00450 350 SMART sant 13 64 IPR001005 -
Gma04g00450 350 SMART sant 67 115 IPR001005 -
Gma04g00450 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma04g00450 350 Gene3D - 70 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00450 Gma-Chr4 4028883 4030752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00450 1 286 MYB Transcription Factor Family AT3G49690 51.266 7.05e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma04g00450 Myb_DNA-binding 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00450 K09422 - gmx:100790407 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00450 04 4028883 4030752 Gma04g00450 04 4028883 4030752 ECH
Gma04g00450 04 4028883 4030752 Gma06g00448 06 3844448 3846358 GST
Gma17g02223 17 40004918 40006893 Gma04g00450 04 4028883 4030752 PCT
Gma14g00823 14 8717694 8719353 Gma04g00450 04 4028883 4030752 PCT
Gma04g00450 04 4028883 4030752 Gma17g02223 17 40004918 40006893 PCT
Gma04g00450 04 4028883 4030752 Gma14g00823 14 8717694 8719353 PCT