LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g00443	ATGAAGCGCATAAATGAGAGTAACAACACCGATGATGGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGCTACTTCAGCAGCCACTGTTCCGACAACCTTCTACATGTCCCCTTCTCAATCTCACTTGTCCAACTTCGGAATGTGTTACGGTGTCGGAGAAAATGGTAACTTCCATTCTCCACTTACGGTTATGCCTCTCAAGTCTGATGGGTCACTTTGTATCTTGGAAGCTCTCAAAAGATCACAAACGCAAGTGATGGTGCCAACTTCGTCTCCGAAATTGGAGGACTTTCTAGGTGGTGCAACTATGGGAACTCACGAATATGGAAGCCACGAGAGAGGTTTGAGCCTAGACAGCATCTATTATAACTCCCAAAACGCAGAGGCTCAACCCAACAGAGACCTTCTTTCACAACCCTTCAGGCAACAAGGTCATATGAGTGTCCAAACACACCCTTATTACTCAGGCCTTGCTTGCCATGGTTTATATCAAGCACCGTTGGAGGAAGAAACAACAAAGGAAACGCACGTGTCGGATTGCAGCTCCCTAATGCCTCAAATGACAGAAGGCTTGAAAAACTGGGTGGCTCCAACAAGGGAGTTTTCAACTCACCAGCAGGTTTTGGAGCAGCAAATGAATTGTGGCATGGGGAATGAGAGAAATGGTGTGTCTTTAGGATCTGTGGGGTGTGGAGAGTTACAGTCTCTAAGCTTATCTATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCTCCTTCTGGAACAGATTCTGTTGCTGTGGATGCAAAGAAGAGAGGGCATGCTAAACTTGGTCAGAAGCAGCCTGTGCATAGAAAATCTATCGACACATTTGGGCAAAGAACCTCGCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACTAGGAAAGGACGACAAGTGTATTTGGGGGGTTATGATATGGAGGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCCCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGATAGAGAATTACCAAGTTCAACTTGAGGAAATGAAGAACATGAGCAGACAGGAATACGTTGCACACTTGAGAAGAAAAAGCAGCGGGTTTTCTAGAGGTGCTTCAATATACAGAGGGGTCACAAGGCATCACCAACATGGAAGATGGCAAGCGAGGATAGGCAGAGTTGCTGGGAACAAAGACCTTTACCTTGGGACGTTCAgcacccaagaggaagcagcagaagcatacgatgtagcggcGATCAAATTTCGCGGCGCAAATGCAGTCACAAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCCAGTAGCAATCTCCTCGCTGGGGAGCTTGCAAGGCGTAAGAAAGATAACGATCCTAGAAACAAGGACATAGACTACAACAAGAGTGTAGTAACAAGTGTGAACAATGAGGAAACGGTTCAAGTTCAAGCAGGAAACAACAATAATGAAAACGACTCAGAGTGGAAGATGGTTTTATTTAACCACCCTTCACAGCAGCAACAGGCAAATGGCAATGGCAGTGACCAAAAAATAATGAACTGTGGAAATTACAGAAACAGTGCATTTTCTATGGCCCTACAAGATCTTATTGGGATTGATTCGGTGGGTTCTGGGCAGCATAATATGCTGGACGAGTCTAGCAAAATTGGGACTCATTTTTCAAACACGTCATCGCTGGTGACAAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAAGGGGTCCCTCGCTTCTGTTCCCAATGCCTCCAATGGAAACAAAGATTGTGAACCCCATTGGTACCAGTGTTACCTCTTGGCTACCCTCACCAACGGTTCAAATGAGGCCTTCTCCTGCTATCTCTTTGTCTCACTTGCCAGTTTTTGCTTCTTGGACTGATACTTAA	1992	0.4448	MKRINESNNTDDGNNHNWLGFSLSPHMKMEATSAATVPTTFYMSPSQSHLSNFGMCYGVGENGNFHSPLTVMPLKSDGSLCILEALKRSQTQVMVPTSSPKLEDFLGGATMGTHEYGSHERGLSLDSIYYNSQNAEAQPNRDLLSQPFRQQGHMSVQTHPYYSGLACHGLYQAPLEEETTKETHVSDCSSLMPQMTEGLKNWVAPTREFSTHQQVLEQQMNCGMGNERNGVSLGSVGCGELQSLSLSMSPGSQSSCVTAPSGTDSVAVDAKKRGHAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYQVQLEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASSNLLAGELARRKKDNDPRNKDIDYNKSVVTSVNNEETVQVQAGNNNNENDSEWKMVLFNHPSQQQQANGNGSDQKIMNCGNYRNSAFSMALQDLIGIDSVGSGQHNMLDESSKIGTHFSNTSSLVTSLSSSREASPEKRGPSLLFPMPPMETKIVNPIGTSVTSWLPSPTVQMRPSPAISLSHLPVFASWTDT	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g00443	663	ProSiteProfiles	AP2/ERF domain profile.	400	458	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	Gene3D	AP2/ERF domain	400	460	IPR036955	GO:0003700\|GO:0006355
	Gma04g00443	663	Gene3D	AP2/ERF domain	297	366	IPR036955	GO:0003700\|GO:0006355
	Gma04g00443	663	Pfam	AP2 domain	400	450	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	Pfam	AP2 domain	298	356	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	PRINTS	Ethylene responsive element binding protein signature	299	310	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	PRINTS	Ethylene responsive element binding protein signature	440	460	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	CDD	AP2	399	460	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	14	661	-	-
	Gma04g00443	663	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	14	661	-	-
	Gma04g00443	663	CDD	AP2	297	363	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	SMART	rav1_2	400	464	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	SMART	rav1_2	298	370	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	ProSiteProfiles	AP2/ERF domain profile.	298	364	IPR001471	GO:0003700\|GO:0006355
	Gma04g00443	663	SUPERFAMILY	DNA-binding domain	399	460	IPR016177	GO:0003677
	Gma04g00443	663	SUPERFAMILY	DNA-binding domain	297	366	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g00443	Gma-Chr4	3932578	3935871	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma04g00443	1	484	AP2-EREBP Transcription Factor Family	AT4G37750	52.710	2.01e-161	473

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Gma04g00443		AP2	1.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g00443	K09285		-	gmx:100787223	1335.09

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g00443	04	3932578	3935871	Gma04g00443	04	3932578	3935871	ECH
	Gma04g00443	04	3932578	3935871	Gma06g00440	06	3751765	3754975	GST
	Gma17g02230	17	40107426	40111319	Gma04g00443	04	3932578	3935871	PCT
	Gma14g00807	14	8500654	8504925	Gma04g00443	04	3932578	3935871	PCT
	Gma04g00443	04	3932578	3935871	Gma17g02230	17	40107426	40111319	PCT
	Gma04g00443	04	3932578	3935871	Gma14g00807	14	8500654	8504925	PCT